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LOC_Os03g51900.1 (LOC_Os03g51900)


Aliases : LOC_Os03g51900

Description : DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa subsp. japonica (sp|q6atj8|rh16_orysj : 990.0)


Gene families : OG0005612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g51900.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00048130 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT4G34910 No alias P-loop containing nucleoside triphosphate hydrolases... 0.12 OrthoFinder output from all 47 species
Als_g00983 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g31815 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0551.g076593 No alias not classified & original description: CDS=64-1935 0.04 OrthoFinder output from all 47 species
Cba_g43203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.24G071500.1 Ceric.24G071500 not classified & original description: pacid=50629253... 0.08 OrthoFinder output from all 47 species
Cre12.g526850 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana 0.16 OrthoFinder output from all 47 species
Dac_g43527 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g02897 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g00762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_38528 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Lfl_g07340 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_71366g0010 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp7g04610.1 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa... 0.15 OrthoFinder output from all 47 species
Smo440996 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana 0.12 OrthoFinder output from all 47 species
Solyc02g070100.3.1 Solyc02g070100 DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
Spa_g09337 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11405 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g40380 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e012111_P001 Zm00001e012111 DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 334 477
IPR011545 DEAD/DEAH_box_helicase_dom 116 295
No external refs found!