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  5. LOC_Os03g50740.1

LOC_Os03g50740.1 (EMB2754, LOC_Os03g50740)


Aliases : EMB2754, LOC_Os03g50740

Description : HOPS-specific component VPS39 of HOPS/CORVET membrane tethering complexes


Gene families : OG0004665 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004665_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g50740.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT4G36630 EMB2754 Vacuolar sorting protein 39 0.03 OrthoFinder output from all 47 species
Adi_g057736 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Sam_g13518 No alias HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species
Zm00001e005474_P001 EMB2754, Zm00001e005474 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001180 CNH_dom 101 275
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 496 606
IPR000547 Clathrin_H-chain/VPS_repeat 625 757
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 859 967
No external refs found!