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  5. LOC_Os03g50300.1

LOC_Os03g50300.1 (CASP, AtCASP, LOC_Os03g50300)


Aliases : CASP, AtCASP, LOC_Os03g50300

Description : golgin (CASP)


Gene families : OG0004640 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004640_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g50300.1

Target Alias Description ECC score Gene Family Method Actions
AT3G18480 CASP, AtCASP CCAAT-displacement protein alternatively spliced product 0.03 OrthoFinder output from all 47 species
Cre04.g223900 CASP, AtCASP No description available 0.03 OrthoFinder output from all 47 species
Cre08.g382650 CASP, AtCASP Vesicle trafficking.target membrane tethering.Golgi... 0.02 OrthoFinder output from all 47 species
GSVIVT01008258001 CASP, AtCASP Vesicle trafficking.target membrane tethering.Golgi... 0.04 OrthoFinder output from all 47 species
Mp6g21020.1 CASP, AtCASP golgin (CASP) 0.03 OrthoFinder output from all 47 species
Msp_g25582 CASP, AtCASP Golgin-type membrane tethering protein *(CASP) &... 0.02 OrthoFinder output from all 47 species
Nbi_g04869 CASP, AtCASP Golgin-type membrane tethering protein *(CASP) &... 0.03 OrthoFinder output from all 47 species
Pir_g19296 CASP, AtCASP Golgin-type membrane tethering protein *(CASP) &... 0.02 OrthoFinder output from all 47 species
Ppi_g14626 CASP, AtCASP Golgin-type membrane tethering protein *(CASP) &... 0.02 OrthoFinder output from all 47 species
Solyc06g069210.3.1 CASP, AtCASP,... golgin (CASP) 0.04 OrthoFinder output from all 47 species
Spa_g26747 CASP, AtCASP Golgin-type membrane tethering protein *(CASP) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006891 intra-Golgi vesicle-mediated transport IEA Interproscan
CC GO:0030173 obsolete integral component of Golgi membrane IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR012955 CASP_C 417 642
No external refs found!