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  5. LOC_Os03g50210.1

LOC_Os03g50210.1 (LOC_Os03g50210)


Aliases : LOC_Os03g50210

Description : no hits & (original description: none)


Gene families : OG0000406 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000406_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g50210.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00238960 OPCL1,... Phytohormones.jasmonic acid.synthesis.OPC-8:CoA synthetase 0.02 OrthoFinder output from all 47 species
AMTR_s00002p00106850 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AMTR_s00003p00244140 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00036p00232910 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT1G13340 No alias Regulator of Vps4 activity in the MVB pathway protein 0.03 OrthoFinder output from all 47 species
AT2G19710 No alias Regulator of Vps4 activity in the MVB pathway protein 0.06 OrthoFinder output from all 47 species
AT4G29440 No alias Regulator of Vps4 activity in the MVB pathway protein 0.02 OrthoFinder output from all 47 species
AT4G35730 No alias Regulator of Vps4 activity in the MVB pathway protein 0.02 OrthoFinder output from all 47 species
Adi_g020442 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.02 OrthoFinder output from all 47 species
Als_g05729 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.04 OrthoFinder output from all 47 species
Als_g49635 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.03 OrthoFinder output from all 47 species
Aob_g33972 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene13351.t1 Aspi01Gene13351 regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.03 OrthoFinder output from all 47 species
Cba_g15528 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.03 OrthoFinder output from all 47 species
Ceric.32G069800.1 Ceric.32G069800 regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.06 OrthoFinder output from all 47 species
Dac_g08698 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.02 OrthoFinder output from all 47 species
Dac_g43865 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.03 OrthoFinder output from all 47 species
Dcu_g01980 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.03 OrthoFinder output from all 47 species
Dde_g18909 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.04 OrthoFinder output from all 47 species
Ehy_g01009 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.02 OrthoFinder output from all 47 species
Ehy_g03830 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.03 OrthoFinder output from all 47 species
Ehy_g17644 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.03 OrthoFinder output from all 47 species
Ehy_g20129 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.07 OrthoFinder output from all 47 species
Ehy_g20250 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20656 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.04 OrthoFinder output from all 47 species
Ehy_g29519 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.04 OrthoFinder output from all 47 species
GSVIVT01001596001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01004308001 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01011918001 No alias No description available 0.1 OrthoFinder output from all 47 species
GSVIVT01015242001 No alias No description available 0.08 OrthoFinder output from all 47 species
GSVIVT01017099001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_14681 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_14953 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g40975 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.04 OrthoFinder output from all 47 species
Len_g58366 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g59871 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.03 OrthoFinder output from all 47 species
MA_10434372g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g09120.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g31103 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.04 OrthoFinder output from all 47 species
Msp_g38957 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.02 OrthoFinder output from all 47 species
Nbi_g11465 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.02 OrthoFinder output from all 47 species
Pir_g08433 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.02 OrthoFinder output from all 47 species
Pir_g09603 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.02 OrthoFinder output from all 47 species
Pir_g19693 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.02 OrthoFinder output from all 47 species
Pir_g43311 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.02 OrthoFinder output from all 47 species
Pir_g47996 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.02 OrthoFinder output from all 47 species
Ppi_g09496 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.04 OrthoFinder output from all 47 species
Ppi_g18214 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.03 OrthoFinder output from all 47 species
Sam_g07326 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g066690.4.1 Solyc06g066690 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc07g032230.3.1 Solyc07g032230 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g22531 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.03 OrthoFinder output from all 47 species
Spa_g25914 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g55110 No alias regulatory protein *(ISTL) of ESCRT-mediated sorting &... 0.04 OrthoFinder output from all 47 species
Tin_g00975 No alias regulatory protein *(ISTL) of ESCRT-mediated sorTing &... 0.03 OrthoFinder output from all 47 species
Tin_g07646 No alias regulatory protein *(ISTL) of ESCRT-mediated sorTing &... 0.03 OrthoFinder output from all 47 species
Zm00001e005428_P001 Zm00001e005428 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR005061 Ist1 20 183
No external refs found!