LOC_Os03g48940.1 (CLC-D, ATCLC-D, LOC_Os03g48940)

Aliases : CLC-D, ATCLC-D, LOC_Os03g48940

Description : anion channel / anion:proton antiporter (CLC)

Gene families : OG0000501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000501_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g48940.1
Cluster	HCCA: Cluster_143

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00103p00080940	CLC-D, ATCLC-D,...	Solute transport.carrier-mediated transport.CLC anion...	0.03	OrthoFinder output from all 47 species
AT5G26240	CLC-D, ATCLC-D	chloride channel D	0.03	OrthoFinder output from all 47 species
Adi_g084261	CLC-A, ATCLC-A,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g29502	CLC-D, ATCLC-D	anion channel / anion:proton antiporter *(CLC) &...	0.03	OrthoFinder output from all 47 species
Aop_g06086	ATCLC-C, CLC-C	anion channel / anion:proton antiporter *(CLC) &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene19325.t1	ATCLC-C, CLC-C,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene51154.t1	CLC-D, ATCLC-D,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene51156.t1	CLC-D, ATCLC-D,...	anion channel / anion:proton antiporter *(CLC) &...	0.03	OrthoFinder output from all 47 species
Azfi_s0173.g055773	ATCLC-C, CLC-C	anion channel / anion:proton antiporter *(CLC) &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000057.10	ATCLC-F, CLCF, CLC-F	Chloride channel protein CLC-d OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001126.4	No alias	Chloride channel protein CLC-c OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dcu_g37323	ATCLC-C, CLC-C	anion channel / anion:proton antiporter *(CLC) &...	0.02	OrthoFinder output from all 47 species
GSVIVT01017933001	CLC-D, ATCLC-D	Solute transport.carrier-mediated transport.CLC anion...	0.03	OrthoFinder output from all 47 species
Lfl_g09124	CLC-D, ATCLC-D	anion channel / anion:proton antiporter *(CLC) &...	0.03	OrthoFinder output from all 47 species
Lfl_g37039	ATCLC-C, CLC-C	anion channel / anion:proton antiporter *(CLC) &...	0.03	OrthoFinder output from all 47 species
Mp1g24100.1	CLC-D, ATCLC-D	anion channel / anion:proton antiporter (CLC)	0.03	OrthoFinder output from all 47 species
Pir_g01369	CLC-D, ATCLC-D	anion channel / anion:proton antiporter *(CLC) &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0114.g020884	CLC-D, ATCLC-D	anion channel / anion:proton antiporter *(CLC) &...	0.03	OrthoFinder output from all 47 species
Sam_g51279	No alias	anion channel / anion:proton antiporter *(CLC) &...	0.02	OrthoFinder output from all 47 species
Smo80232	CLC-D, ATCLC-D	Solute transport.carrier-mediated transport.CLC anion...	0.04	OrthoFinder output from all 47 species
Solyc09g075800.4.1	CLC-D, ATCLC-D,...	anion channel / anion:proton antiporter (CLC)	0.04	OrthoFinder output from all 47 species
Zm00001e005338_P001	CLC-D, ATCLC-D,...	anion channel / anion:proton antiporter (CLC)	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	None	Extended
MF	GO:0005244	voltage-gated monoatomic ion channel activity	None	Extended
MF	GO:0005247	voltage-gated chloride channel activity	IEA	Interproscan
MF	GO:0005253	monoatomic anion channel activity	None	Extended
MF	GO:0005254	chloride channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	None	Extended
BP	GO:0006820	monoatomic anion transport	None	Extended
BP	GO:0006821	chloride transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008308	voltage-gated monoatomic anion channel activity	None	Extended
MF	GO:0008509	monoatomic anion transmembrane transporter activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015103	inorganic anion transmembrane transporter activity	None	Extended
MF	GO:0015108	chloride transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
BP	GO:0015698	inorganic anion transport	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022832	voltage-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022839	monoatomic ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
CC	GO:0005777	peroxisome	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
MF	GO:0016409	palmitoyltransferase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001807	Cl-channel_volt-gated	129	552

External Links

No external refs found!

LOC_Os03g48940.1 (CLC-D, ATCLC-D, LOC_Os03g48940)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation