LOC_Os03g47140.1 (GRF1, AtGRF1, LOC_Os03g47140)

Aliases : GRF1, AtGRF1, LOC_Os03g47140

Description : component GRF of GRF-GIF transcriptional complex

Gene families : OG0000528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000528_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g47140.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00189460	GRF4, AtGRF4,...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.05	OrthoFinder output from all 47 species
AT2G06200	GRF6, AtGRF6	growth-regulating factor 6	0.02	OrthoFinder output from all 47 species
AT2G22840	GRF1, AtGRF1	growth-regulating factor 1	0.03	OrthoFinder output from all 47 species
AT2G36400	GRF3, AtGRF3	growth-regulating factor 3	0.03	OrthoFinder output from all 47 species
AT3G13960	GRF5, AtGRF5	growth-regulating factor 5	0.07	OrthoFinder output from all 47 species
AT3G52910	GRF4, AtGRF4	growth-regulating factor 4	0.03	OrthoFinder output from all 47 species
AT4G37740	GRF2, AtGRF2	growth-regulating factor 2	0.07	OrthoFinder output from all 47 species
Adi_g059082	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g26167	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Als_g13520	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Als_g16124	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Als_g51482	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Aob_g10720	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g14316	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Aob_g26666	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Aob_g27286	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Azfi_s0032.g024577	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Azfi_s0097.g043820	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Azfi_s0256.g060519	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Cba_g07600	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Cba_g09120	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Cba_g12857	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Cba_g15543	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Ceric.15G046200.1	GRF1, AtGRF1,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Ceric.19G047800.1	GRF2, AtGRF2,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Dac_g23460	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Dcu_g16923	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Dcu_g20310	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
GSVIVT01007165001	GRF2, AtGRF2	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	OrthoFinder output from all 47 species
GSVIVT01015095001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.05	OrthoFinder output from all 47 species
GSVIVT01016762001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.06	OrthoFinder output from all 47 species
GSVIVT01019667001	AtGRF8, GRF8	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	OrthoFinder output from all 47 species
GSVIVT01019913001	GRF3, AtGRF3	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	OrthoFinder output from all 47 species
GSVIVT01024326001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	OrthoFinder output from all 47 species
GSVIVT01027535001	GRF9, AtGRF9	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	OrthoFinder output from all 47 species
GSVIVT01033800001	GRF3, AtGRF3	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.09	OrthoFinder output from all 47 species
GSVIVT01038629001	AtGRF7, GRF7	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	OrthoFinder output from all 47 species
Gb_20443	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Gb_26136	GRF5, AtGRF5	component GRF of GRF-GIF transcriptional complex	0.02	OrthoFinder output from all 47 species
Lfl_g24257	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
MA_111469g0010	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Mp8g16900.1	GRF2, AtGRF2	component GRF of GRF-GIF transcriptional complex	0.02	OrthoFinder output from all 47 species
Ore_g20696	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Ore_g31052	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Ppi_g06956	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Ppi_g63627	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019225	No alias	not classified & original description: CDS=695-3535	0.03	OrthoFinder output from all 47 species
Sam_g37566	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g52037	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g091540.3.1	GRF9, AtGRF9,...	component GRF of GRF-GIF transcriptional complex	0.07	OrthoFinder output from all 47 species
Solyc02g092070.3.1	GRF2, AtGRF2,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Solyc03g082430.1.1	AtGRF7, GRF7,...	component GRF of GRF-GIF transcriptional complex	0.08	OrthoFinder output from all 47 species
Solyc07g041640.3.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Solyc08g005430.3.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.07	OrthoFinder output from all 47 species
Solyc08g083230.3.1	AtGRF8, GRF8,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Solyc09g009200.3.1	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Solyc10g083510.2.1	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
Solyc12g096070.2.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Spa_g06684	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Zm00001e011207_P003	GRF1, AtGRF1,...	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
Zm00001e012104_P002	GRF1, AtGRF1,...	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
Zm00001e015436_P001	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
Zm00001e015561_P002	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.06	OrthoFinder output from all 47 species
Zm00001e029851_P005	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Zm00001e030774_P001	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Zm00001e036657_P001	GRF6, AtGRF6,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR014977	WRC_dom	152	194
IPR014978	Gln-Leu-Gln_QLQ	92	125

External Links

No external refs found!

LOC_Os03g47140.1 (GRF1, AtGRF1, LOC_Os03g47140)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation