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  5. LOC_Os03g47070.1

LOC_Os03g47070.1 (RXW8, LOC_Os03g47070)


Aliases : RXW8, LOC_Os03g47070

Description : calcium-permeable channel (OSCA)


Gene families : OG0000264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g47070.1
Cluster HCCA: Cluster_480

Target Alias Description ECC score Gene Family Method Actions
Cba_g26928 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01012666001 No alias Solute transport.channels.OSCA calcium-permeable channel 0.01 OrthoFinder output from all 47 species
LOC_Os07g05570.1 ERD4, LOC_Os07g05570 calcium-permeable channel (OSCA) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0273.g027046 HYP1, ATHYP1 calcium-permeable channel *(OSCA) & original... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003864 CSC1/OSCA1-like_7TM 58 324
IPR027815 CSC1/OSCA1-like_cyt 4 47
No external refs found!