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  5. LOC_Os03g46710.1

LOC_Os03g46710.1 (LOC_Os03g46710)


Aliases : LOC_Os03g46710

Description : no hits & (original description: none)


Gene families : OG0007147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007147_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g46710.1

Target Alias Description ECC score Gene Family Method Actions
Aob_g11562 No alias regulatory component *(FYVE4) of ESCRT-III complex &... 0.03 OrthoFinder output from all 47 species
Ceric.32G049500.1 Ceric.32G049500 regulatory component *(FYVE4) of ESCRT-III complex &... 0.04 OrthoFinder output from all 47 species
Dcu_g34377 No alias regulatory component *(FYVE4) of ESCRT-III complex &... 0.02 OrthoFinder output from all 47 species
GSVIVT01006404001 No alias No description available 0.09 OrthoFinder output from all 47 species
Gb_13734 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g10684 No alias regulatory component *(FYVE4) of ESCRT-III complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e014963_P001 Zm00001e014963 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006914 autophagy IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000306 Znf_FYVE 66 123
No external refs found!