LOC_Os03g44900.1 (LOC_Os03g44900)

Aliases : LOC_Os03g44900

Description : component NOT3/5 of mRNA deadenylation CCR4-NOT complex

Gene families : OG0003951 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003951_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g44900.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00093740	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.deadenylation-dependent...	0.06	OrthoFinder output from all 47 species
AMTR_s00012p00217710	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.deadenylation-dependent...	0.04	OrthoFinder output from all 47 species
AT5G18230	No alias	transcription regulator NOT2/NOT3/NOT5 family protein	0.05	OrthoFinder output from all 47 species
Adi_g021088	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
Aev_g14080	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.05	OrthoFinder output from all 47 species
Ala_g02487	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Aop_g00795	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Ceric.09G054000.1	Ceric.09G054000	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000057.119	No alias	RNA processing.RNA decay.deadenylation-dependent...	0.01	OrthoFinder output from all 47 species
Dcu_g13304	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.04	OrthoFinder output from all 47 species
Ehy_g01609	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
GSVIVT01033382001	No alias	RNA processing.RNA decay.deadenylation-dependent...	0.04	OrthoFinder output from all 47 species
Len_g47292	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.06	OrthoFinder output from all 47 species
Lfl_g02194	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.07	OrthoFinder output from all 47 species
Mp5g06180.1	No alias	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.06	OrthoFinder output from all 47 species
Ore_g18536	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.07	OrthoFinder output from all 47 species
Solyc12g019860.2.1	Solyc12g019860	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.08	OrthoFinder output from all 47 species
Zm00001e005243_P002	Zm00001e005243	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.04	OrthoFinder output from all 47 species
Zm00001e012376_P003	Zm00001e012376	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004525	ribonuclease III activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
BP	GO:0022406	membrane docking	IEP	HCCA
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	HCCA
BP	GO:0048278	vesicle docking	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0140029	exocytic process	IEP	HCCA
BP	GO:0140056	organelle localization by membrane tethering	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007207	Not_N	4	227
IPR007282	NOT2/3/5_C	710	847

External Links

No external refs found!

LOC_Os03g44900.1 (LOC_Os03g44900)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation