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  5. LOC_Os03g38800.1

LOC_Os03g38800.1 (LOC_Os03g38800)


Aliases : LOC_Os03g38800

Description : AAA-ATPase At5g17740 OS=Arabidopsis thaliana (sp|q9fn77|aatpg_arath : 354.0)


Gene families : OG0000163 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000163_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g38800.1
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00014p00241930 BCS1,... Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00019p00244740 evm_27.TU.AmTr_v1... Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00244830 AATP1,... AAA-ATPase At3g50940 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00036p00176790 BCS1,... Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT2G18193 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
AT3G28510 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 OrthoFinder output from all 47 species
AT3G28540 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 OrthoFinder output from all 47 species
AT3G28600 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
AT3G50930 BCS1 cytochrome BC1 synthesis 0.04 OrthoFinder output from all 47 species
AT5G17730 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
AT5G40000 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
Adi_g016569 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g054385 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g115155 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g07534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g08283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g15221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g18804 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31916 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06267 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05196 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06181 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12588 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g32826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06413.t1 Aspi01Gene06413 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene06431.t1 Aspi01Gene06431 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30040.t1 Aspi01Gene30040 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g32806 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G052300.1 Ceric.01G052300 not classified & original description: pacid=50592955... 0.06 OrthoFinder output from all 47 species
Ceric.19G071300.1 Ceric.19G071300 not classified & original description: pacid=50576608... 0.03 OrthoFinder output from all 47 species
Dcu_g05632 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g17234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g42407 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g52355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01247 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g11177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16997 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g29814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001352001 No alias AAA-ATPase At4g30250 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01023336001 No alias AAA-ATPase At3g28600 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01027397001 No alias AAA-ATPase At2g46620 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01029545001 No alias AAA-ATPase At3g50940 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01032552001 No alias AAA-ATPase At3g28580 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01032553001 No alias AAA-ATPase At3g28580 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01032554001 AATP1 AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_16063 No alias AAA-ATPase At2g46620 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_34238 No alias AAA-ATPase At5g57480 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os01g19260.1 AATP1, LOC_Os01g19260 AAA-ATPase At3g28580 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os01g45450.1 LOC_Os01g45450 AAA-ATPase At5g17740 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os03g02330.1 LOC_Os03g02330 AAA-ATPase At2g46620 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
LOC_Os05g51130.1 BCS1, LOC_Os05g51130 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os09g27340.1 LOC_Os09g27340 AAA-ATPase At5g57480 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os12g24320.1 AATP1, LOC_Os12g24320 AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
LOC_Os12g28137.1 AATP1, LOC_Os12g28137 AAA-ATPase At3g28580 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os12g28177.1 AATP1, LOC_Os12g28177 AAA-ATPase At3g28580 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os12g28550.1 LOC_Os12g28550 AAA-ATPase At5g40000 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os12g28590.1 AATP1, LOC_Os12g28590 AAA-ATPase At3g28580 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os12g44190.1 AATP1, LOC_Os12g44190 AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Len_g10718 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g15160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10067279g0010 No alias AAA-ATPase At5g57480 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10430798g0010 No alias AAA-ATPase At4g30250 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10435468g0010 No alias AAA-ATPase At3g28510 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_296237g0020 BCS1 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_56516g0010 No alias AAA-ATPase At3g28570, mitochondrial OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_604139g0010 AATP1 AAA-ATPase At3g28510 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp7g18570.1 No alias AAA-ATPase At4g25835 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Msp_g10169 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g10792 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g11419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14679 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g33481 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03672 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g28074 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08375 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g41804 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04477 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04503 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0163.g024038 No alias not classified & original description: CDS=1-1761 0.02 OrthoFinder output from all 47 species
Smo407065 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc02g062550.3.1 BCS1, Solyc02g062550 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc02g087540.3.1 Solyc02g087540 AAA-ATPase At3g28510 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Solyc03g033790.4.1 BCS1, Solyc03g033790 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Solyc03g033840.4.1 BCS1, Solyc03g033840 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc03g082640.3.1 Solyc03g082640 AAA-ATPase At2g46620 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc05g007470.4.1 Solyc05g007470 AAA-ATPase At3g28580 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc10g007280.4.1 BCS1, Solyc10g007280 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g11504 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g49606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04596 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003357_P001 AATP1, Zm00001e003357 AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Zm00001e003358_P001 AATP1, Zm00001e003358 AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e011416_P001 Zm00001e011416 AAA-ATPase At3g28510 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e012527_P001 Zm00001e012527 AAA-ATPase At2g46620 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e013138_P001 Zm00001e013138 AAA-ATPase At5g57480 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e033043_P001 Zm00001e033043 AAA-ATPase At3g28580 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e035111_P001 BCS1, Zm00001e035111 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e038158_P001 AATP1, Zm00001e038158 AAA-ATPase At3g28580 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR025753 AAA_N_dom 56 162
IPR003959 ATPase_AAA_core 385 441
IPR003959 ATPase_AAA_core 283 349
No external refs found!