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  5. LOC_Os03g25920.1

LOC_Os03g25920.1 (LOC_Os03g25920)


Aliases : LOC_Os03g25920

Description : amino acid transporter (LAT)


Gene families : OG0000891 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000891_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g25920.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00198660 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.03 OrthoFinder output from all 47 species
AMTR_s00217p00018260 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.03 OrthoFinder output from all 47 species
AMTR_s00217p00020070 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.03 OrthoFinder output from all 47 species
Aop_g16530 No alias amino acid transporter *(LAT) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11259.t1 Aspi01Gene11259 amino acid transporter *(LAT) & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g01182 No alias amino acid transporter *(LAT) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12582 No alias amino acid transporter *(LAT) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g005900.2.1 Solyc01g005900 amino acid transporter (LAT) 0.03 OrthoFinder output from all 47 species
Solyc08g005540.2.1 Solyc08g005540 amino acid transporter (LAT) 0.04 OrthoFinder output from all 47 species
Spa_g53432 No alias amino acid transporter *(LAT) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g03954 No alias amino acid transporter *(LAT) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23115 No alias amino acid transporter *(LAT) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001820_P001 Zm00001e001820 amino acid transporter (LAT) 0.06 OrthoFinder output from all 47 species
Zm00001e015550_P001 Zm00001e015550 amino acid transporter (LAT) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
InterPro domains Description Start Stop
IPR002293 AA/rel_permease1 46 435
No external refs found!