LOC_Os03g22570.1 (ATCBP80, ABH1, ENS,...)


Aliases : ATCBP80, ABH1, ENS, CBP80, LOC_Os03g22570

Description : component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC)


Gene families : OG0004633 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004633_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g22570.1

Target Alias Description ECC score Gene Family Method Actions
AT2G13540 ATCBP80, ABH1, ENS, CBP80 ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g18568 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.05 OrthoFinder output from all 47 species
Aop_g05374 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.03 OrthoFinder output from all 47 species
Ceric.38G051300.1 ATCBP80, ABH1,... component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021589.24 ATCBP80, ABH1, ENS, CBP80 RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA... 0.01 OrthoFinder output from all 47 species
Cre12.g524100 No alias RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA... 0.06 OrthoFinder output from all 47 species
Dac_g23459 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.03 OrthoFinder output from all 47 species
Dcu_g08222 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.05 OrthoFinder output from all 47 species
Ehy_g05053 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.03 OrthoFinder output from all 47 species
GSVIVT01037230001 ATCBP80, ABH1, ENS, CBP80 RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA... 0.07 OrthoFinder output from all 47 species
Len_g07985 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.02 OrthoFinder output from all 47 species
Lfl_g02038 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.03 OrthoFinder output from all 47 species
MA_10436272g0010 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC) 0.05 OrthoFinder output from all 47 species
Mp1g05560.1 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC) 0.1 OrthoFinder output from all 47 species
Ppi_g03962 ATCBP80, ABH1, ENS, CBP80 component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.02 OrthoFinder output from all 47 species
Sam_g12525 No alias component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.05 OrthoFinder output from all 47 species
Sam_g28009 No alias component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex... 0.07 OrthoFinder output from all 47 species
Smo115849 ATCBP80, ABH1, ENS, CBP80 RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA... 0.03 OrthoFinder output from all 47 species
Solyc10g005530.3.1 ATCBP80, ABH1,... component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC) 0.03 OrthoFinder output from all 47 species
Zm00001e001643_P004 ATCBP80, ABH1,... component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016070 RNA metabolic process IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR015174 MIF4G-like_typ-2 491 829
IPR015172 MIF4G-like_typ-1 342 466
IPR003890 MIF4G-like_typ-3 38 216
No external refs found!