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  5. LOC_Os03g22380.1

LOC_Os03g22380.1 (At-SR34, SRP34,...)


Aliases : At-SR34, SRP34, ATSRP34, SR34, SR1, LOC_Os03g22380

Description : SR30/34 RNA splicing factor


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g22380.1

Target Alias Description ECC score Gene Family Method Actions
AT1G02840 At-SR34, SRP34,... RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
Adi_g056476 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05960 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20048 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0197.g057374 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: CDS=1-1167 0.02 OrthoFinder output from all 47 species
Cba_g24620 SR34b, At-SR34b RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.23G039200.1 At-SR34a, SR34a,... RNA splicing factor *(SR30/34) & original description:... 0.04 OrthoFinder output from all 47 species
Cre06.g278239 SR30, ATSRP30, At-SR30 RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Dac_g00635 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g38127 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36549 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g20957 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04480 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02953 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05721 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14701 No alias RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g14702 No alias RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18787 No alias RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Smo97566 SR30, ATSRP30, At-SR30 RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Solyc09g075090.1.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.06 OrthoFinder output from all 47 species
Spa_g09542 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17256 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g00604 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30637 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e031418_P004 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 113 175
IPR000504 RRM_dom 9 76
No external refs found!