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Aliases : LOC_Os03g22320
Description : SSU processome assembly factor (UTP14)
Gene families : OG0004949 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004949_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os03g22320.1 | |
| Cluster | HCCA: Cluster_58 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00126p00067580 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.04 | OrthoFinder output from all 47 species | |
| AT4G02400 | No alias | U3 ribonucleoprotein (Utp) family protein | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g17255 | No alias | SSU processome assembly factor *(UTP14) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g10224 | No alias | SSU processome assembly factor *(UTP14) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g17573 | No alias | SSU processome assembly factor *(UTP14) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g07008 | No alias | SSU processome assembly factor *(UTP14) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0008.g011531 | No alias | SSU processome assembly factor *(UTP14) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.29G001000.1 | Ceric.29G001000 | SSU processome assembly factor *(UTP14) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Cre11.g478950 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.15 | OrthoFinder output from all 47 species | |
| Dcu_g09161 | No alias | SSU processome assembly factor *(UTP14) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g30545 | No alias | SSU processome assembly factor *(UTP14) & original... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01028028001 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.08 | OrthoFinder output from all 47 species | |
| Len_g07763 | No alias | SSU processome assembly factor *(UTP14) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g30230 | No alias | SSU processome assembly factor *(UTP14) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g22021 | No alias | SSU processome assembly factor *(UTP14) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g02378 | No alias | SSU processome assembly factor *(UTP14) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g14227 | No alias | SSU processome assembly factor *(UTP14) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Smo442069 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.07 | OrthoFinder output from all 47 species | |
| Solyc09g005760.3.1 | Solyc09g005760 | SSU processome assembly factor (UTP14) | 0.07 | OrthoFinder output from all 47 species | |
| Zm00001e001621_P002 | Zm00001e001621 | SSU processome assembly factor (UTP14) | 0.19 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| BP | GO:0001510 | RNA methylation | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| MF | GO:0010181 | FMN binding | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016763 | pentosyltransferase activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
| BP | GO:0030488 | tRNA methylation | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| CC | GO:0030684 | preribosome | IEP | HCCA |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | HCCA |
| CC | GO:0032040 | small-subunit processome | IEP | HCCA |
| BP | GO:0032259 | methylation | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| CC | GO:0034708 | methyltransferase complex | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |