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  5. LOC_Os03g21950.1

LOC_Os03g21950.1 (FUM1, LOC_Os03g21950)


Aliases : FUM1, LOC_Os03g21950

Description : fumarase


Gene families : OG0004044 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004044_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g21950.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AT2G47510 FUM1 fumarase 1 0.13 OrthoFinder output from all 47 species
Azfi_s0245.g059961 FUM1 EC_4.2 carbon-oxygen lyase & original description: CDS=241-1770 0.03 OrthoFinder output from all 47 species
Ceric.28G057900.1 FUM1, Ceric.28G057900 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Cre01.g020223 FUM1 Cellular respiration.tricarboxylic acid cycle.fumarase 0.01 OrthoFinder output from all 47 species
Dcu_g02907 FUM1 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Mp6g19990.1 FUM1 fumarase 0.09 OrthoFinder output from all 47 species
Pir_g65520 FUM1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c23_19500V3.1 FUM1, Pp3c23_19500 FUMARASE 2 0.04 OrthoFinder output from all 47 species
Smo113300 FUM1 Cellular respiration.tricarboxylic acid cycle.fumarase 0.03 OrthoFinder output from all 47 species
Solyc09g075450.3.1 FUM1, Solyc09g075450 fumarase 0.18 OrthoFinder output from all 47 species
Spa_g06276 FUM1 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g12353 FUM1 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001600_P001 FUM1, Zm00001e001600 fumarase 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006099 tricarboxylic acid cycle IEA Interproscan
MF GO:0016829 lyase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
InterPro domains Description Start Stop
IPR022761 Fumarate_lyase_N 50 380
IPR018951 Fumarase_C_C 446 499
No external refs found!