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  5. LOC_Os03g21560.1

LOC_Os03g21560.1 (PSB27, LOC_Os03g21560)


Aliases : PSB27, LOC_Os03g21560

Description : Psb27 protein involved in PS-II assembly


Gene families : OG0006913 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006913_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g21560.1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00251710 PSB27,... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AT1G03600 PSB27 photosystem II family protein 0.27 OrthoFinder output from all 47 species
Adi_g017378 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.12 OrthoFinder output from all 47 species
Adi_g017379 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.11 OrthoFinder output from all 47 species
Ala_g03684 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.13 OrthoFinder output from all 47 species
Aob_g03856 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.1 OrthoFinder output from all 47 species
Aop_g01610 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.11 OrthoFinder output from all 47 species
Aspi01Gene05705.t1 PSB27, Aspi01Gene05705 protein involved in PS-II assembly *(Psb27) & original... 0.08 OrthoFinder output from all 47 species
Azfi_s0531.g075849 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.1 OrthoFinder output from all 47 species
Ceric.35G049900.1 PSB27, Ceric.35G049900 protein involved in PS-II assembly *(Psb27) & original... 0.27 OrthoFinder output from all 47 species
Cre05.g243800 PSB27 Photosynthesis.photophosphorylation.photosystem... 0.2 OrthoFinder output from all 47 species
Dac_g02601 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g44405 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.11 OrthoFinder output from all 47 species
Dde_g21620 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.12 OrthoFinder output from all 47 species
Ehy_g19278 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.13 OrthoFinder output from all 47 species
Ehy_g20883 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.07 OrthoFinder output from all 47 species
GSVIVT01030552001 PSB27 Photosynthesis.photophosphorylation.photosystem... 0.19 OrthoFinder output from all 47 species
Gb_23437 PSB27 Psb27 protein involved in PS-II assembly 0.04 OrthoFinder output from all 47 species
Len_g11187 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.15 OrthoFinder output from all 47 species
MA_388691g0010 PSB27 Psb27 protein involved in PS-II assembly 0.19 OrthoFinder output from all 47 species
Mp3g19780.1 PSB27 Psb27 protein involved in PS-II assembly 0.31 OrthoFinder output from all 47 species
Msp_g04977 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.13 OrthoFinder output from all 47 species
Nbi_g03338 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.14 OrthoFinder output from all 47 species
Pir_g09257 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.11 OrthoFinder output from all 47 species
Ppi_g10971 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.02 OrthoFinder output from all 47 species
Smo77713 PSB27 Photosynthesis.photophosphorylation.photosystem... 0.12 OrthoFinder output from all 47 species
Solyc07g054290.1.1 PSB27, Solyc07g054290 Psb27 protein involved in PS-II assembly 0.16 OrthoFinder output from all 47 species
Spa_g04006 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.07 OrthoFinder output from all 47 species
Spa_g04007 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.1 OrthoFinder output from all 47 species
Spa_g05331 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.12 OrthoFinder output from all 47 species
Spa_g05332 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.05 OrthoFinder output from all 47 species
Tin_g00234 PSB27 protein involved in PS-II assembly *(Psb27) & original... 0.14 OrthoFinder output from all 47 species
Zm00001e001572_P001 PSB27, Zm00001e001572 Psb27 protein involved in PS-II assembly 0.27 OrthoFinder output from all 47 species
Zm00001e038249_P001 PSB27, Zm00001e038249 Psb27 protein involved in PS-II assembly 0.27 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0010207 photosystem II assembly IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR025585 PSII_Pbs27 17 161
No external refs found!