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  5. LOC_Os03g21160.2

LOC_Os03g21160.2 (LOC_Os03g21160)


Aliases : LOC_Os03g21160

Description : C3H zinc finger transcription factor


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g21160.2
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00021560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
AT3G21100 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
AT3G51950 No alias Zinc finger (CCCH-type) family protein / RNA recognition... 0.03 OrthoFinder output from all 47 species
AT3G63450 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
AT5G12440 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.02 OrthoFinder output from all 47 species
Adi_g025310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g109492 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g112963 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0037.g026036 No alias not classified & original description: CDS=1-2112 0.04 OrthoFinder output from all 47 species
Dcu_g51304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031538001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 OrthoFinder output from all 47 species
LOC_Os11g03220.1 LOC_Os11g03220 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Ore_g17242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22013 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g31565 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g54278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005782 No alias not classified & original description: CDS=1-2136 0.05 OrthoFinder output from all 47 species
Sam_g09058 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g008600.4.1 Solyc01g008600 C3H zinc finger transcription factor 0.1 OrthoFinder output from all 47 species
Spa_g27908 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e001546_P001 Zm00001e001546 C3H zinc finger transcription factor 0.07 OrthoFinder output from all 47 species
Zm00001e020869_P004 Zm00001e020869 C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Zm00001e024022_P001 Zm00001e024022 C3H zinc finger transcription factor 0.09 OrthoFinder output from all 47 species
Zm00001e038256_P001 Zm00001e038256 C3H zinc finger transcription factor 0.07 OrthoFinder output from all 47 species
Zm00001e039250_P004 Zm00001e039250 C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 371 416
IPR000571 Znf_CCCH 233 253
No external refs found!