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  5. LOC_Os03g19920.1

LOC_Os03g19920.1 (PAPS3, LOC_Os03g19920)


Aliases : PAPS3, LOC_Os03g19920

Description : poly(A) RNA polymerase


Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g19920.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AT1G17980 PAPS1 poly(A) polymerase 1 0.04 OrthoFinder output from all 47 species
AT2G25850 PAPS2 poly(A) polymerase 2 0.04 OrthoFinder output from all 47 species
Aspi01Gene01167.t1 PAP(IV), nPAP,... poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26466.t1 PAPS2, Aspi01Gene26466 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26471.t1 PAPS2, Aspi01Gene26471 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26473.t1 PAPS2, Aspi01Gene26473 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26481.t1 PAPS2, Aspi01Gene26481 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26482.t1 PAPS2, Aspi01Gene26482 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26489.t1 PAPS2, Aspi01Gene26489 poly(A) RNA polymerase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene26493.t1 PAPS2, Aspi01Gene26493 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28614.t3 PAP(IV), nPAP,... poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015292001 PAP(IV), nPAP RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Solyc12g099180.3.1 PAPS3, Solyc12g099180 poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004652 polynucleotide adenylyltransferase activity IEA Interproscan
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
BP GO:0043631 RNA polyadenylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007010 PolA_pol_RNA-bd_dom 400 437
IPR007012 PolA_pol_cen_dom 73 393
IPR002934 Polymerase_NTP_transf_dom 128 172
No external refs found!