1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g18840.1

LOC_Os03g18840.1 (LOC_Os03g18840)


Aliases : LOC_Os03g18840

Description : no hits & (original description: none)


Gene families : OG0005121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005121_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g18840.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00144740 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT5G11240 No alias transducin family protein / WD-40 repeat family protein 0.2 OrthoFinder output from all 47 species
Aev_g13801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47262 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g40498 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0028.g024031 No alias not classified & original description: CDS=168-2150 0.08 OrthoFinder output from all 47 species
Ceric.1Z072200.1 Ceric.1Z072200 not classified & original description: pacid=50586493... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000123.23 No alias No description available 0.09 OrthoFinder output from all 47 species
Cre12.g538500 No alias No description available 0.18 OrthoFinder output from all 47 species
Dac_g02302 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02665 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01017246001 No alias No description available 0.13 OrthoFinder output from all 47 species
GSVIVT01035079001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_29253 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Len_g55550 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10435957g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp5g00060.1 No alias no hits & (original description: none) 0.15 OrthoFinder output from all 47 species
Ore_g17083 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g13559 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c7_70V3.1 Pp3c7_70 transducin family protein / WD-40 repeat family protein 0.03 OrthoFinder output from all 47 species
Ppi_g09282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36919 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo404454 No alias No description available 0.09 OrthoFinder output from all 47 species
Solyc03g116380.4.1 Solyc03g116380 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Tin_g02088 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e001372_P001 Zm00001e001372 no hits & (original description: none) 0.19 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 12 35
IPR001680 WD40_repeat 193 231
IPR007148 SSU_processome_Utp12 491 582
No external refs found!