1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g15440.1

LOC_Os03g15440.1 (LOC_Os03g15440)


Aliases : LOC_Os03g15440

Description : transcription factor (bHLH)


Gene families : OG0001169 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001169_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g15440.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00019320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
AMTR_s00101p00150740 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
AT1G68810 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.07 OrthoFinder output from all 47 species
AT2G41130 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G25710 BHLH32, ATAIG1, TMO5 basic helix-loop-helix 32 0.09 OrthoFinder output from all 47 species
Adi_g071759 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36805 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene06352.t1 Aspi01Gene06352 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001194 No alias bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Azfi_s0037.g025937 No alias bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Cba_g29521 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G052000.1 Ceric.01G052000 bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g13418 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020688001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.06 OrthoFinder output from all 47 species
GSVIVT01032789001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
LOC_Os01g11910.1 LOC_Os01g11910 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os08g37290.1 BHLH32, ATAIG1,... transcription factor (bHLH) 0.07 OrthoFinder output from all 47 species
MA_65818g0010 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Msp_g05533 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0153.g023505 No alias bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Solyc02g076920.3.1 Solyc02g076920 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc04g006990.3.1 Solyc04g006990 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc04g014360.3.1 Solyc04g014360 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc04g076240.3.1 Solyc04g076240 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc05g009880.3.1 Solyc05g009880 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Solyc10g078380.2.1 Solyc10g078380 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e001119_P001 Zm00001e001119 transcription factor (bHLH) 0.09 OrthoFinder output from all 47 species
Zm00001e006132_P001 Zm00001e006132 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Zm00001e009812_P001 Zm00001e009812 transcription factor (bHLH) 0.09 OrthoFinder output from all 47 species
Zm00001e009972_P001 Zm00001e009972 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e016455_P001 BHLH32, ATAIG1,... transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e022445_P001 Zm00001e022445 transcription factor (bHLH) 0.12 OrthoFinder output from all 47 species
Zm00001e034395_P001 Zm00001e034395 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e038535_P001 Zm00001e038535 transcription factor (bHLH) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 201 248
No external refs found!