LOC_Os03g13300.1 (GAD, GAD1, LOC_Os03g13300)

Aliases : GAD, GAD1, LOC_Os03g13300

Description : glutamate decarboxylase

Gene families : OG0000690 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000690_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g13300.1
Cluster	HCCA: Cluster_136

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00142920	GAD, GAD1,...	Amino acid metabolism.biosynthesis.glutamate...	0.06	OrthoFinder output from all 47 species
AMTR_s00024p00144920	GAD5,...	Glutamate decarboxylase 5 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00024p00151670	GAD, GAD1,...	Amino acid metabolism.biosynthesis.glutamate...	0.03	OrthoFinder output from all 47 species
AT2G02010	GAD4	glutamate decarboxylase 4	0.03	OrthoFinder output from all 47 species
AT5G17330	GAD, GAD1	glutamate decarboxylase	0.04	OrthoFinder output from all 47 species
Adi_g074621	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g01711	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g03196	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene37978.t1	GAD, GAD1,...	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene69536.t1	GAD, GAD1,...	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene69538.t1	GAD, GAD1,...	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g06463	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g11722	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g32572	GAD, GAD1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g10779	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01000391001	GAD, GAD1	Amino acid metabolism.biosynthesis.glutamate...	0.03	OrthoFinder output from all 47 species
GSVIVT01011564001	GAD, GAD1	Amino acid metabolism.biosynthesis.glutamate...	0.02	OrthoFinder output from all 47 species
GSVIVT01035247001	GAD, GAD1	Amino acid metabolism.biosynthesis.glutamate...	0.04	OrthoFinder output from all 47 species
Gb_33200	GAD, GAD1	glutamate decarboxylase	0.02	OrthoFinder output from all 47 species
Gb_38320	GAD, GAD1	glutamate decarboxylase	0.02	OrthoFinder output from all 47 species
LOC_Os03g51080.1	GAD, GAD1, LOC_Os03g51080	glutamate decarboxylase	0.05	OrthoFinder output from all 47 species
LOC_Os08g36320.1	GAD, GAD1, LOC_Os08g36320	glutamate decarboxylase	0.03	OrthoFinder output from all 47 species
Len_g20416	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.08	OrthoFinder output from all 47 species
Lfl_g22346	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
MA_65512g0010	GAD3	Glutamate decarboxylase OS=Petunia hybrida...	0.03	OrthoFinder output from all 47 species
MA_89828g0010	GAD, GAD1	glutamate decarboxylase	0.02	OrthoFinder output from all 47 species
Nbi_g07461	GAD2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g09361	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g10261	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g30214	GAD4	glutamate decarboxylase *(GAD) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020087	GAD4	glutamate decarboxylase *(GAD) & original description:...	0.02	OrthoFinder output from all 47 species
Sam_g38516	No alias	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g098240.3.1	GAD, GAD1, Solyc03g098240	glutamate decarboxylase	0.04	OrthoFinder output from all 47 species
Solyc04g025530.3.1	GAD4, Solyc04g025530	glutamate decarboxylase	0.05	OrthoFinder output from all 47 species
Solyc11g011920.2.1	GAD, GAD1, Solyc11g011920	glutamate decarboxylase	0.03	OrthoFinder output from all 47 species
Spa_g05104	GAD, GAD1	glutamate decarboxylase *(GAD) & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g12089	GAD4	glutamate decarboxylase *(GAD) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g55008	GAD2	glutamate decarboxylase *(GAD) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e038628_P001	GAD, GAD1, Zm00001e038628	Glutamate decarboxylase 1 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	IEA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	IEA	Interproscan
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0030170	pyridoxal phosphate binding	IEA	Interproscan
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
MF	GO:0070279	vitamin B6 binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
CC	GO:0030286	dynein complex	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002129	PyrdxlP-dep_de-COase	33	381

External Links

No external refs found!

LOC_Os03g13300.1 (GAD, GAD1, LOC_Os03g13300)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation