Aliases : LOC_Os03g13170
Description : component RPL40 of LSU proteome component
Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00017p00094950 | UBQ6,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.12 | OrthoFinder output from all 47 species | |
AMTR_s00040p00104050 | evm_27.TU.AmTr_v1... | Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris | 0.05 | OrthoFinder output from all 47 species | |
AMTR_s00095p00146440 | UBQ6,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.03 | OrthoFinder output from all 47 species | |
AT1G23410 | No alias | Ribosomal protein S27a / Ubiquitin family protein | 0.04 | OrthoFinder output from all 47 species | |
AT2G36170 | No alias | Ubiquitin supergroup;Ribosomal protein L40e | 0.21 | OrthoFinder output from all 47 species | |
AT2G47110 | UBQ6 | ubiquitin 6 | 0.16 | OrthoFinder output from all 47 species | |
AT3G52590 | UBQ1, EMB2167,... | ubiquitin extension protein 1 | 0.22 | OrthoFinder output from all 47 species | |
AT3G62250 | UBQ5 | ubiquitin 5 | 0.17 | OrthoFinder output from all 47 species | |
AT5G20620 | UBQ4 | ubiquitin 4 | 0.02 | OrthoFinder output from all 47 species | |
Adi_g125802 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Adi_g129218 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g00530 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Ala_g22856 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.11 | OrthoFinder output from all 47 species | |
Ala_g31081 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Ala_g31252 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.09 | OrthoFinder output from all 47 species | |
Als_g28226 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Als_g63594 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g16439 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
Aop_g30723 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.08 | OrthoFinder output from all 47 species | |
Aop_g64104 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Aspi01Gene54823.t1 | Aspi01Gene54823 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g23546 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Cba_g37486 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.08G035500.1 | Ceric.08G035500 | component *(eL40) of large ribosomal-subunit (LSU)... | 0.09 | OrthoFinder output from all 47 species | |
Ceric.12G071700.1 | UBQ14, Ceric.12G071700 | UBQ ubiquitin-fold protein & original description:... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.21G057000.1 | UBQ6, Ceric.21G057000 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.09 | OrthoFinder output from all 47 species | |
Ceric.21G057400.1 | UBQ6, Ceric.21G057400 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.09 | OrthoFinder output from all 47 species | |
Ceric.22G050200.1 | UBQ6, Ceric.22G050200 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
Ceric.27G040600.1 | Ceric.27G040600 | component *(eL40) of large ribosomal-subunit (LSU)... | 0.1 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00022075.50 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.09 | OrthoFinder output from all 47 species | |
Cre01.g007051 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.04 | OrthoFinder output from all 47 species | |
Cre06.g273600 | UBQ6 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.18 | OrthoFinder output from all 47 species | |
Dac_g08496 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g44234 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g26143 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
Dcu_g38726 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
GSVIVT01012906001 | No alias | Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana | 0.13 | OrthoFinder output from all 47 species | |
GSVIVT01022543001 | No alias | Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum | 0.1 | OrthoFinder output from all 47 species | |
GSVIVT01028198001 | No alias | Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana | 0.11 | OrthoFinder output from all 47 species | |
GSVIVT01033876001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01038617001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.1 | OrthoFinder output from all 47 species | |
Gb_01257 | No alias | component RPL40 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
Gb_15027 | UBQ6 | component RPS27a of SSU proteome | 0.13 | OrthoFinder output from all 47 species | |
Gb_40288 | UBQ6 | component RPS27a of SSU proteome | 0.1 | OrthoFinder output from all 47 species | |
Gb_41257 | No alias | component RPL40 of LSU proteome component | 0.14 | OrthoFinder output from all 47 species | |
Len_g02099 | RUB1, ATRUB1, NEDD8 | RUB ubiquitin-fold protein & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Len_g14648 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Len_g14650 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Len_g27536 | UBQ14 | UBQ ubiquitin-fold protein & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Len_g41265 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g15041 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g16898 | RUB1, ATRUB1, NEDD8 | RUB ubiquitin-fold protein & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g22645 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g23519 | UBQ14 | UBQ ubiquitin-fold protein & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g26766 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.04 | OrthoFinder output from all 47 species | |
MA_13101g0020 | No alias | component RPL40 of LSU proteome component | 0.11 | OrthoFinder output from all 47 species | |
MA_529552g0010 | UBQ6 | component RPS27a of SSU proteome | 0.09 | OrthoFinder output from all 47 species | |
MA_9129425g0010 | No alias | component RPL40 of LSU proteome component | 0.05 | OrthoFinder output from all 47 species | |
Mp7g12760.1 | UBQ6 | component RPS27a of SSU proteome | 0.04 | OrthoFinder output from all 47 species | |
Mp8g00780.1 | No alias | component RPL40 of LSU proteome component | 0.13 | OrthoFinder output from all 47 species | |
Msp_g06697 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Msp_g07973 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g34148 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Msp_g35305 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Msp_g38968 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.07 | OrthoFinder output from all 47 species | |
Nbi_g16243 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g02936 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Pir_g08617 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Pp3c10_25270V3.1 | Pp3c10_25270 | ubiquitin extension protein 1 | 0.11 | OrthoFinder output from all 47 species | |
Pp3c12_5640V3.1 | UBQ6, Pp3c12_5640 | ubiquitin 6 | 0.07 | OrthoFinder output from all 47 species | |
Pp3c12_5760V3.1 | UBQ6, Pp3c12_5760 | ubiquitin 6 | 0.07 | OrthoFinder output from all 47 species | |
Pp3c20_23170V3.1 | Pp3c20_23170 | ubiquitin extension protein 1 | 0.08 | OrthoFinder output from all 47 species | |
Pp3c24_430V3.1 | Pp3c24_430 | ubiquitin extension protein 1 | 0.12 | OrthoFinder output from all 47 species | |
Pp3c4_19000V3.1 | UBQ6, Pp3c4_19000 | ubiquitin 6 | 0.09 | OrthoFinder output from all 47 species | |
Pp3c8_14230V3.1 | UBQ6, Pp3c8_14230 | ubiquitin 6 | 0.07 | OrthoFinder output from all 47 species | |
Ppi_g04808 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g20546 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g36247 | RUB1, ATRUB1, NEDD8 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0055.g014510 | UBQ6 | not classified & original description: CDS=1-258 | 0.03 | OrthoFinder output from all 47 species | |
Sam_g07359 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.08 | OrthoFinder output from all 47 species | |
Sam_g07360 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.12 | OrthoFinder output from all 47 species | |
Sam_g07364 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g20114 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Sam_g26881 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g44136 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Smo111605 | UBQ6 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.08 | OrthoFinder output from all 47 species | |
Solyc01g068045.1.1 | UBQ6, Solyc01g068045 | component RPS27a of SSU proteome | 0.19 | OrthoFinder output from all 47 species | |
Solyc03g082570.4.1 | Solyc03g082570 | component RPL40 of LSU proteome component | 0.13 | OrthoFinder output from all 47 species | |
Solyc08g008590.4.1 | Solyc08g008590 | component RPL40 of LSU proteome component | 0.05 | OrthoFinder output from all 47 species | |
Solyc08g083120.3.1 | Solyc08g083120 | component RPL40 of LSU proteome component | 0.17 | OrthoFinder output from all 47 species | |
Solyc12g098940.2.1 | UBQ6, Solyc12g098940 | component RPS27a of SSU proteome | 0.18 | OrthoFinder output from all 47 species | |
Solyc12g099025.1.1 | UBQ6, Solyc12g099025 | component RPS27a of SSU proteome | 0.15 | OrthoFinder output from all 47 species | |
Spa_g02055 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
Spa_g29603 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.1 | OrthoFinder output from all 47 species | |
Spa_g29979 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
Spa_g43571 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g56402 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
Tin_g28918 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e000962_P001 | Zm00001e000962 | component RPL40 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e009474_P001 | Zm00001e009474 | component RPL40 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e026237_P001 | UBQ6, Zm00001e026237 | component RPS27a of SSU proteome | 0.19 | OrthoFinder output from all 47 species | |
Zm00001e028916_P001 | UBQ6, Zm00001e028916 | component RPS27a of SSU proteome | 0.2 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
MF | GO:0005515 | protein binding | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
MF | GO:0004298 | threonine-type endopeptidase activity | IEP | HCCA |
CC | GO:0005787 | signal peptidase complex | IEP | HCCA |
CC | GO:0005839 | proteasome core complex | IEP | HCCA |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
BP | GO:0006457 | protein folding | IEP | HCCA |
BP | GO:0006465 | signal peptide processing | IEP | HCCA |
BP | GO:0006508 | proteolysis | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
MF | GO:0008233 | peptidase activity | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
CC | GO:0016272 | prefoldin complex | IEP | HCCA |
BP | GO:0016485 | protein processing | IEP | HCCA |
CC | GO:0016592 | mediator complex | IEP | HCCA |
CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
BP | GO:0051604 | protein maturation | IEP | HCCA |
MF | GO:0070003 | threonine-type peptidase activity | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
CC | GO:0140534 | endoplasmic reticulum protein-containing complex | IEP | HCCA |
CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
CC | GO:1902494 | catalytic complex | IEP | HCCA |
CC | GO:1905368 | peptidase complex | IEP | HCCA |
No external refs found! |