LOC_Os03g13010.1 (LOC_Os03g13010)

Aliases : LOC_Os03g13010

Description : U-box domain-containing protein 75 OS=Oryza sativa subsp. japonica (sp|q10pi9|pub75_orysj : 745.0)

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g13010.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00257160	PUB26,...	U-box domain-containing protein 25 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
AT1G66160	CMPG1, ATCMPG1	CYS, MET, PRO, and GLY protein 1	0.05	OrthoFinder output from all 47 species
Adi_g003285	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g014414	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g37454	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g19134	PUB25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g00903	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g10662	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g04683	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g01464	PUB26	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g24916	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01011139001	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
GSVIVT01011140001	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01011616001	CMPG1, ATCMPG1	U-box domain-containing protein 20 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Gb_26429	PUB26	U-box domain-containing protein 26 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_10425865g0010	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_410546g0010	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_95662g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp7g11020.1	PUB25	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Msp_g12974	PUB25	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g06628	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g37565	PUB26	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g12004	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002717	PUB26	not classified & original description: CDS=1-1404	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015794	PUB26	U-Box-group-III E3 ubiquitin ligase & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0148.g023196	PUB26	not classified & original description: CDS=1-1080	0.05	OrthoFinder output from all 47 species
Smo403954	PUB25	U-box domain-containing protein 25 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Solyc01g107980.3.1	PUB26, Solyc01g107980	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
MF	GO:0019104	DNA N-glycosylase activity	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	65	134

External Links

No external refs found!

LOC_Os03g13010.1 (LOC_Os03g13010)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation