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  5. LOC_Os03g12760.1

LOC_Os03g12760.1 (LOC_Os03g12760)


Aliases : LOC_Os03g12760

Description : transcription factor (bHLH). bHLH-IVa-class iron homeostasis regulator


Gene families : OG0001148 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g12760.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AT2G22750 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G22760 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G22770 NAI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G37850 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 OrthoFinder output from all 47 species
Aev_g01447 No alias bHLH-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.03G102500.1 Ceric.03G102500 bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g12323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003697001 NAI1 RNA biosynthesis.transcriptional activation.bHLH... 0.07 OrthoFinder output from all 47 species
GSVIVT01003701001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01004409001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01006588001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01036959001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.1 OrthoFinder output from all 47 species
Gb_13728 No alias transcription factor (bHLH). bHLH-IVa-class iron... 0.04 OrthoFinder output from all 47 species
LOC_Os03g46860.1 LOC_Os03g46860 transcription factor (bHLH). bHLH-IVa-class iron... 0.05 OrthoFinder output from all 47 species
LOC_Os03g51580.1 LOC_Os03g51580 transcription factor (bHLH). bHLH-IVa-class iron... 0.05 OrthoFinder output from all 47 species
Lfl_g20093 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g30933 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_142125g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_149167g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_283702g0010 No alias transcription factor (bHLH). bHLH-IVa-class iron... 0.03 OrthoFinder output from all 47 species
MA_4761g0020 No alias transcription factor (bHLH). bHLH-IVa-class iron... 0.05 OrthoFinder output from all 47 species
MA_50811g0010 NAI1 transcription factor (bHLH). bHLH-IVa-class iron... 0.03 OrthoFinder output from all 47 species
MA_94246g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g02460.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp8g06230.1 BHLH42, TT8 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Msp_g48784 NAI1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g37020 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g31815 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g35905 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g091800.4.1 Solyc02g091800 transcription factor (bHLH). bHLH-IVa-class iron... 0.04 OrthoFinder output from all 47 species
Solyc02g091810.2.1 Solyc02g091810 transcription factor (bHLH). bHLH-IVa-class iron... 0.05 OrthoFinder output from all 47 species
Solyc02g091820.3.1 Solyc02g091820 transcription factor (bHLH). bHLH-IVa-class iron... 0.04 OrthoFinder output from all 47 species
Solyc05g009640.4.1 Solyc05g009640 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc06g064580.2.1 Solyc06g064580 transcription factor (bHLH). bHLH-IVa-class iron... 0.02 OrthoFinder output from all 47 species
Solyc06g064590.3.1 Solyc06g064590 transcription factor (bHLH). bHLH-IVa-class iron... 0.04 OrthoFinder output from all 47 species
Zm00001e000935_P001 Zm00001e000935 transcription factor (bHLH). bHLH-IVa-class iron... 0.05 OrthoFinder output from all 47 species
Zm00001e002570_P001 Zm00001e002570 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e003313_P001 NAI1, Zm00001e003313 transcription factor (bHLH). bHLH-IVa-class iron... 0.09 OrthoFinder output from all 47 species
Zm00001e003314_P001 Zm00001e003314 transcription factor (bHLH). bHLH-IVa-class iron... 0.07 OrthoFinder output from all 47 species
Zm00001e005533_P001 Zm00001e005533 transcription factor (bHLH). bHLH-IVa-class iron... 0.04 OrthoFinder output from all 47 species
Zm00001e012122_P001 Zm00001e012122 transcription factor (bHLH). bHLH-IVa-class iron... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006835 dicarboxylic acid transport IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0015740 C4-dicarboxylate transport IEP HCCA
BP GO:0015743 malate transport IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
BP GO:0015939 pantothenate metabolic process IEP HCCA
BP GO:0015940 pantothenate biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
BP GO:0046942 carboxylic acid transport IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 157 204
No external refs found!