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  5. LOC_Os03g12570.1

LOC_Os03g12570.1 (CMT3, LOC_Os03g12570)


Aliases : CMT3, LOC_Os03g12570

Description : DNA chromomethylase (CMT)


Gene families : OG0002093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002093_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g12570.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Adi_g060185 CMT3 DNA chromomethylase *(CMT) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25407 CMT3 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07756 CMT3 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24159 CMT3 DNA chromomethylase *(CMT) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14579 CMT3 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62076 CMT3 DNA chromomethylase *(CMT) & original description: none 0.05 OrthoFinder output from all 47 species
Solyc08g005400.4.1 CMT2, Solyc08g005400 DNA chromomethylase (CMT) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
MF GO:0004672 protein kinase activity IEA Interproscan
BP GO:0006468 protein phosphorylation IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030570 pectate lyase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR001525 C5_MeTfrase 647 1009
IPR001025 BAH_dom 313 435
IPR001245 Ser-Thr/Tyr_kinase_cat_dom 1403 1714
IPR023780 Chromo_domain 586 640
No external refs found!