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  5. LOC_Os03g10930.2

LOC_Os03g10930.2 (LOC_Os03g10930)


Aliases : LOC_Os03g10930

Description : no hits & (original description: none)


Gene families : OG0007148 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g10930.2
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AT3G59650 No alias mitochondrial ribosomal protein L51/S25/CI-B8 family protein 0.12 OrthoFinder output from all 47 species
Adi_g060436 No alias component *(mL43) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Azfi_s0022.g015938 No alias component *(mL43) of large mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000215.63 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre06.g270650 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01038138001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_40085 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_9472213g0010 No alias no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Pp3c1_20100V3.1 Pp3c1_20100 mitochondrial ribosomal protein L51/S25/CI-B8 family protein 0.02 OrthoFinder output from all 47 species
Smo85537 No alias No description available 0.04 OrthoFinder output from all 47 species
Tin_g06229 No alias component *(mL43) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Zm00001e000722_P002 Zm00001e000722 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e038758_P001 Zm00001e038758 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007741 Ribosome/NADH_DH 26 75
No external refs found!