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  5. LOC_Os03g07160.1

LOC_Os03g07160.1 (LOC_Os03g07160)


Aliases : LOC_Os03g07160

Description : phenylpropanoid biosynthesis regulator (SAGL1)


Gene families : OG0000469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000469_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os03g07160.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00247110 SKIP4,... F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Aev_g04076 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ala_g06127 No alias substrate adaptor *(SKIP4) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Als_g02525 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aob_g12305 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aop_g04885 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Cba_g09527 SKIP6 substrate adaptor *(SKIP6) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ehy_g02568 No alias substrate adaptor *(SKIP4) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Lfl_g38592 SKIP6 substrate adaptor *(SKIP6) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Mp2g26320.1 No alias F-box/kelch-repeat protein At1g55270 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Pir_g12494 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Pnu_g01249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g13401 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Sam_g19058 No alias substrate adaptor *(SKIP6) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 79 116
IPR006652 Kelch_1 217 263
No external refs found!