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  5. LOC_Os03g06960.1

LOC_Os03g06960.1 (VAMP726, ATVAMP726,...)


Aliases : VAMP726, ATVAMP726, LOC_Os03g06960

Description : R-SNARE component VAMP721/VAMP722 of SNARE cell-plate vesicle fusion complex. VAMP7-type R-type SNARE longin protein


Gene families : OG0000720 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000720_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g06960.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AT1G04750 ATVAMP721,... vesicle-associated membrane protein 721 0.03 OrthoFinder output from all 47 species
AT1G04760 VAMP726, ATVAMP726 vesicle-associated membrane protein 726 0.02 OrthoFinder output from all 47 species
AT2G32670 ATVAMP725, VAMP725 vesicle-associated membrane protein 725 0.02 OrthoFinder output from all 47 species
AT2G33110 ATVAMP723, VAMP723 vesicle-associated membrane protein 723 0.03 OrthoFinder output from all 47 species
AT2G33120 SAR1, ATVAMP722, VAMP722 synaptobrevin-related protein 1 0.02 OrthoFinder output from all 47 species
Adi_g012928 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Ala_g31901 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Als_g39830 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Aob_g27234 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Aop_g11465 VAMP727, ATVAMP727 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Aspi01Gene60342.t1 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Ceric.27G008700.1 VAMP727,... R-type VAMP7-group component of SNARE longin membrane... 0.04 OrthoFinder output from all 47 species
Cre04.g225900 ATVAMP725, VAMP725 Vesicle trafficking.SNARE target membrane recognition... 0.02 OrthoFinder output from all 47 species
Dde_g21636 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
GSVIVT01017751001 ATVAMP725, VAMP725 Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species
Len_g05152 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Len_g24858 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Len_g37941 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Len_g48886 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Lfl_g04524 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
MA_174857g0010 VAMP726, ATVAMP726 R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.03 OrthoFinder output from all 47 species
Mp4g07690.1 VAMP726, ATVAMP726 VAMP7-type R-type SNARE longin protein 0.03 OrthoFinder output from all 47 species
Mp8g09990.1 ATVAMP721,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.03 OrthoFinder output from all 47 species
Ore_g04687 VAMP727, ATVAMP727 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Ore_g25595 VAMP726, ATVAMP726 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Pnu_g01930 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Pnu_g03767 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001719 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023181 VAMP727, ATVAMP727 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Sam_g38843 No alias R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Smo164037 ATVAMP721,... Vesicle trafficking.SNARE target membrane recognition... 0.04 OrthoFinder output from all 47 species
Solyc01g066940.3.1 ATVAMP725,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.04 OrthoFinder output from all 47 species
Solyc09g091610.3.1 VAMP726,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.04 OrthoFinder output from all 47 species
Solyc12g098180.3.1 VAMP726,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.07 OrthoFinder output from all 47 species
Spa_g17472 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Zm00001e000500_P003 VAMP726,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.05 OrthoFinder output from all 47 species
Zm00001e009585_P002 ATVAMP725,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.02 OrthoFinder output from all 47 species
Zm00001e011409_P003 ATVAMP725,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.02 OrthoFinder output from all 47 species
Zm00001e039018_P001 VAMP726,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR010908 Longin_dom 35 109
IPR001388 Synaptobrevin-like 132 217
No external refs found!