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  5. LOC_Os03g06139.1

LOC_Os03g06139.1 (LOC_Os03g06139)


Aliases : LOC_Os03g06139

Description : subfamily ABCG transporter


Gene families : OG0000438 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000438_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g06139.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00153830 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
AMTR_s01016p00008750 evm_27.TU.AmTr_v1... ABC transporter G family member 22 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Adi_g107318 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29670 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g63592 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12549.t3 Aspi01Gene12549 sporopollenin precursor exporter *(ABCG26) & original... 0.03 OrthoFinder output from all 47 species
Cba_g22394 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.22 ABCG14 ABC transporter G family member 22 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_38402 ABCG14 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Len_g19406 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Mp6g05900.1 ABCG14 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Zm00001e000439_P004 Zm00001e000439 subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004096 catalase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 195 346
IPR013525 ABC_2_trans 516 725
No external refs found!