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  5. LOC_Os03g05300.1

LOC_Os03g05300.1 (LOC_Os03g05300)


Aliases : LOC_Os03g05300

Description : scaffolding component CKS of cyclin-dependent kinase complex


Gene families : OG0002701 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002701_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g05300.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00140p00038880 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclin-dependent kinase... 0.06 OrthoFinder output from all 47 species
Aop_g22173 CKS2 scaffold component *(CKS) of cyclin-dependent kinase... 0.02 OrthoFinder output from all 47 species
Ceric.20G054400.1 CKS1AT, CKS1,... scaffold component *(CKS) of cyclin-dependent kinase... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020780.5 No alias Cell cycle.regulation.cyclin-dependent kinase... 0.03 OrthoFinder output from all 47 species
Cre03.g180350 No alias Cell cycle.regulation.cyclin-dependent kinase... 0.09 OrthoFinder output from all 47 species
Dac_g26714 CKS2 scaffold component *(CKS) of cyclin-dependent kinase... 0.09 OrthoFinder output from all 47 species
Len_g41049 CKS1AT, CKS1 scaffold component *(CKS) of cyclin-dependent kinase... 0.05 OrthoFinder output from all 47 species
Lfl_g40067 CKS1AT, CKS1 scaffold component *(CKS) of cyclin-dependent kinase... 0.03 OrthoFinder output from all 47 species
MA_364061g0010 CKS1AT, CKS1 scaffolding component CKS of cyclin-dependent kinase complex 0.05 OrthoFinder output from all 47 species
MA_475176g0010 CKS2 scaffolding component CKS of cyclin-dependent kinase complex 0.06 OrthoFinder output from all 47 species
Mp1g16700.1 No alias scaffolding component CKS of cyclin-dependent kinase complex 0.08 OrthoFinder output from all 47 species
Msp_g29168 CKS1AT, CKS1 scaffold component *(CKS) of cyclin-dependent kinase... 0.05 OrthoFinder output from all 47 species
Nbi_g08553 CKS2 scaffold component *(CKS) of cyclin-dependent kinase... 0.03 OrthoFinder output from all 47 species
Pp3c2_6200V3.1 Pp3c2_6200 CDK-subunit 2 0.03 OrthoFinder output from all 47 species
Sam_g26303 No alias scaffold component *(CKS) of cyclin-dependent kinase... 0.02 OrthoFinder output from all 47 species
Smo92278 CKS1AT, CKS1 Cell cycle.regulation.cyclin-dependent kinase... 0.02 OrthoFinder output from all 47 species
Spa_g48395 CKS1AT, CKS1 scaffold component *(CKS) of cyclin-dependent kinase... 0.1 OrthoFinder output from all 47 species
Tin_g18395 CKS1AT, CKS1 scaffold component *(CKS) of cyclin-dependent kinase... 0.04 OrthoFinder output from all 47 species
Zm00001e000375_P001 CKS1AT, CKS1,... scaffolding component CKS of cyclin-dependent kinase complex 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031503 protein-containing complex localization IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0033566 gamma-tubulin complex localization IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR000789 Cyclin-dep_kinase_reg-sub 4 70
No external refs found!