1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g03350.1

LOC_Os03g03350.1 (LOC_Os03g03350)


Aliases : LOC_Os03g03350

Description : Probable polygalacturonase OS=Vitis vinifera (sp|a7pzl3|pglr_vitvi : 574.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 56.2)


Gene families : OG0000312 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000312_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g03350.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00141260 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 OrthoFinder output from all 47 species
AT1G19170 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G23500 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g43887 No alias EC_3.2 glycosylase & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g14170 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g14851 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene29551.t2 Aspi01Gene29551 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g06837 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12348 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22323 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09567 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g09827 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026985001 No alias Probable polygalacturonase OS=Vitis vinifera 0.02 OrthoFinder output from all 47 species
Ore_g19426 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Smo78556 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
Tin_g06929 No alias EC_3.2 glycosylase & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e021051_P001 Zm00001e021051 Probable polygalacturonase OS=Vitis vinifera... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0007165 signal transduction IEP HCCA
CC GO:0031082 BLOC complex IEP HCCA
CC GO:0031083 BLOC-1 complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 77 418
No external refs found!