LOC_Os03g03070.1 (GL19, AGL19, LOC_Os03g03070)

Aliases : GL19, AGL19, LOC_Os03g03070

Description : MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica (sp|q9xj60|mad50_orysj : 241.0)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g03070.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00109p00015260	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
AMTR_s00109p00019490	AGL16,...	No description available	0.03	OrthoFinder output from all 47 species
Aev_g49663	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g11269	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g28471	SHP2, AGL5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g30277	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09954	AGL2, SEP1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g18204	AGL21	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g18795	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g32548	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g33966	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44552.t1	AGL13, Aspi01Gene44552	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.38G021500.1	AGL2, SEP1,...	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g48575	AGL7, AP1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g10603	AGL42	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g13869	AGL6	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01008560001	SOC1, AGL20, ATSOC1	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01012110001	AGL32, TT16, ABS	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01025945001	STK, AGL11	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01026207001	AGL32, TT16, ABS	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
Gb_38922	AGL6	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
LOC_Os03g11614.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Len_g07821	AGL61, DIA	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g14037	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g23025	AGL21	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_1170g0010	AGL8, FUL	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_19296g0010	AGL9, SEP3	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_95674g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
MA_9841429g0010	AGL9, SEP3	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Nbi_g21242	AGL16	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g05105	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g48804	AGL8, FUL	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.03	OrthoFinder output from all 47 species
Pir_g64963	AGL6	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g41504	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g18903	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo121275	AGL7, AP1	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
Solyc03g114840.3.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Solyc04g078300.3.1	AGL104, Solyc04g078300	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Spa_g51497	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e023825_P002	SVP, AGL22,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e036159_P001	AGL24, Zm00001e036159	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
Zm00001e038096_P002	SOC1, AGL20,...	transcription factor (MADS/AGL)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	9	92

External Links

No external refs found!

LOC_Os03g03070.1 (GL19, AGL19, LOC_Os03g03070)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation