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  5. LOC_Os03g03000.1

LOC_Os03g03000.1 (LOC_Os03g03000)


Aliases : LOC_Os03g03000

Description : transcription factor (bHLH)


Gene families : OG0000768 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000768_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g03000.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272070 FMA,... RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
AMTR_s00008p00198780 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
AT2G46810 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
Cba_g25240 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G040300.1 Ceric.21G040300 bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g02905 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04681 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21962 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028719001 SPCH RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
Len_g11887 FMA bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g08528 MUTE bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_194157g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_686524g0010 FMA transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e000161_P002 Zm00001e000161 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Zm00001e015494_P002 Zm00001e015494 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e024824_P001 SPCH, Zm00001e024824 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e037075_P001 SPCH, Zm00001e037075 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e041403_P001 Zm00001e041403 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 115 166
No external refs found!