LOC_Os02g56110.1 (LOC_Os02g56110)

Aliases : LOC_Os02g56110

Description : large subunit gamma of AP-1 trans-Golgi network cargo adaptor complex

Gene families : OG0002603 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002603_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g56110.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G60070	No alias	Adaptor protein complex AP-1, gamma subunit	0.06	OrthoFinder output from all 47 species
Aev_g07309	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.06	OrthoFinder output from all 47 species
Ala_g14098	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.07	OrthoFinder output from all 47 species
Als_g14323	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Azfi_s0005.g009317	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.04	OrthoFinder output from all 47 species
Cba_g15244	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.07	OrthoFinder output from all 47 species
Ceric.1Z105200.1	Ceric.1Z105200	large subunit gamma of AP-1 trans-Golgi network cargo...	0.04	OrthoFinder output from all 47 species
Ceric.37G015500.1	GAMMA-ADAPTIN 1,...	not classified & original description: pacid=50616075...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000217.33	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.02	OrthoFinder output from all 47 species
Cre16.g676650	GAMMA-ADAPTIN 1,...	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.04	OrthoFinder output from all 47 species
Dcu_g01942	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.12	OrthoFinder output from all 47 species
Ehy_g06143	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.04	OrthoFinder output from all 47 species
Ehy_g08600	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.07	OrthoFinder output from all 47 species
GSVIVT01020209001	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.07	OrthoFinder output from all 47 species
Gb_02741	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.06	OrthoFinder output from all 47 species
Len_g40020	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.08	OrthoFinder output from all 47 species
Lfl_g22120	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
MA_32067g0010	GAMMA-ADAPTIN 1,...	AP-1 complex subunit gamma-1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_675g0010	No alias	AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Mp2g02140.1	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.06	OrthoFinder output from all 47 species
Msp_g09172	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Nbi_g04417	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.1	OrthoFinder output from all 47 species
Ore_g15695	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Pir_g10906	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Pnu_g06469	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Ppi_g14572	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Sam_g28418	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo168054	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.05	OrthoFinder output from all 47 species
Solyc04g025870.4.1	Solyc04g025870	large subunit gamma of AP-1 trans-Golgi network cargo...	0.12	OrthoFinder output from all 47 species
Solyc05g005780.3.1	Solyc05g005780	large subunit gamma of AP-1 trans-Golgi network cargo...	0.08	OrthoFinder output from all 47 species
Spa_g55808	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.1	OrthoFinder output from all 47 species
Tin_g02865	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Zm00001e023661_P002	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.17	OrthoFinder output from all 47 species
Zm00001e030101_P002	Zm00001e030101	large subunit gamma of AP-1 trans-Golgi network cargo...	0.12	OrthoFinder output from all 47 species
Zm00001e036396_P001	Zm00001e036396	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030126	COPI vesicle coat	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002553	Clathrin/coatomer_adapt-like_N	43	584
IPR008152	Clathrin_a/b/g-adaptin_app_Ig	773	886

External Links

No external refs found!

LOC_Os02g56110.1 (LOC_Os02g56110)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation