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  5. LOC_Os02g54500.1

LOC_Os02g54500.1 (LOC_Os02g54500)


Aliases : LOC_Os02g54500

Description : no hits & (original description: none)


Gene families : OG0004219 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004219_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g54500.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00254210 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
Ala_g08496 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0001.g000787 No alias not classified & original description: CDS=268-3795 0.04 OrthoFinder output from all 47 species
Ceric.07G054900.1 Ceric.07G054900 not classified & original description: pacid=50626774... 0.09 OrthoFinder output from all 47 species
Cre12.g506650 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g14638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12810 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026995001 No alias No description available 0.03 OrthoFinder output from all 47 species
Lfl_g06750 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10432719g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp5g05920.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g20303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05457 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g11827 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g02392 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12416 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo75259 No alias No description available 0.06 OrthoFinder output from all 47 species
Solyc01g094880.3.1 Solyc01g094880 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e023736_P002 Zm00001e023736 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR009771 Ribosome_control_1 674 922
No external refs found!