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  5. LOC_Os02g53060.1

LOC_Os02g53060.1 (PBA1, LOC_Os02g53060)


Aliases : PBA1, LOC_Os02g53060

Description : component beta type-1 of 26S proteasome


Gene families : OG0003808 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003808_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g53060.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00199560 PBA1,... Protein degradation.26S proteasome.20S core... 0.05 OrthoFinder output from all 47 species
AT4G31300 PBA1 N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.12 OrthoFinder output from all 47 species
Adi_g063247 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.07 OrthoFinder output from all 47 species
Aev_g02000 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Ala_g10663 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Als_g01526 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Aop_g00255 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.08 OrthoFinder output from all 47 species
Ceric.24G046300.1 PBA1, Ceric.24G046300 beta-type-1 component *(PBA) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001098.5 PBA1 Protein degradation.26S proteasome.20S core... 0.09 OrthoFinder output from all 47 species
Cre06.g279000 PBA1 Protein degradation.26S proteasome.20S core... 0.15 OrthoFinder output from all 47 species
Cre12.g531100 PBA1 Protein degradation.26S proteasome.20S core... 0.2 OrthoFinder output from all 47 species
Dac_g01306 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Dde_g13556 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
GSVIVT01032253001 PBA1 Protein degradation.26S proteasome.20S core... 0.06 OrthoFinder output from all 47 species
Len_g14846 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.08 OrthoFinder output from all 47 species
Len_g14847 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Mp6g09980.1 PBA1 component beta type-1 of 26S proteasome 0.15 OrthoFinder output from all 47 species
Msp_g08337 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Nbi_g00361 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Ore_g05180 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Pir_g00835 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Pnu_g02359 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ppi_g41753 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004858 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Sam_g07445 No alias beta-type-1 component *(PBA) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Smo227897 PBA1 Protein degradation.26S proteasome.20S core... 0.08 OrthoFinder output from all 47 species
Spa_g09820 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Spa_g09821 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Spa_g18519 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Tin_g26432 PBA1 beta-type-1 component *(PBA) of 26S proteasome &... 0.08 OrthoFinder output from all 47 species
Zm00001e029965_P002 PBA1, Zm00001e029965 component beta type-1 of 26S proteasome 0.07 OrthoFinder output from all 47 species
Zm00001e036550_P001 PBA1, Zm00001e036550 component beta type-1 of 26S proteasome 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005787 signal peptidase complex IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0018279 protein N-linked glycosylation via asparagine IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 24 204
No external refs found!