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  5. LOC_Os02g52510.1

LOC_Os02g52510.1 (ATRAD54, CHR25,...)


Aliases : ATRAD54, CHR25, RAD54, LOC_Os02g52510

Description : chromatin remodeling factor (Rad54)


Gene families : OG0003309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003309_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g52510.1
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Cba_g11241 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G046200.1 ATRAD54, CHR25,... chromatin remodeling factor *(RAD54) & original... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020614.39 ATRAD54, CHR25, RAD54 Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Cre10.g430950 ATRAD54, CHR25, RAD54 Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Gb_22245 ATRAD54, CHR25, RAD54 DNA repair and recombination protein RAD54 OS=Oryza... 0.08 OrthoFinder output from all 47 species
Len_g24635 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.04 OrthoFinder output from all 47 species
Mp6g06120.1 ATRAD54, CHR25, RAD54 chromatin remodeling factor (Rad54) 0.08 OrthoFinder output from all 47 species
Solyc04g056410.3.1 ATRAD54, CHR25,... chromatin remodeling factor (Rad54) 0.11 OrthoFinder output from all 47 species
Spa_g37488 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49299 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015936_P001 ATRAD54, CHR25,... chromatin remodeling factor (Rad54) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0030915 Smc5-Smc6 complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0106068 SUMO ligase complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 595 703
IPR000330 SNF2_N 258 544
No external refs found!