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  5. LOC_Os02g51480.1

LOC_Os02g51480.1 (EMB2453, ATPPR5,...)


Aliases : EMB2453, ATPPR5, LOC_Os02g51480

Description : Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic OS=Oryza sativa subsp. japonica (sp|a3abe1|ppr5_orysj : 919.0)


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g51480.1

Target Alias Description ECC score Gene Family Method Actions
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g05989 EMB2453, ATPPR5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene36337.t1 EMB2453, ATPPR5,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0174.g055903 EMB2453, ATPPR5 not classified & original description: CDS=133-1563 0.02 OrthoFinder output from all 47 species
Ceric.21G045800.1 EMB2453, ATPPR5,... not classified & original description: pacid=50604035... 0.03 OrthoFinder output from all 47 species
Dac_g11531 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01190 EMB2453, ATPPR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g02809 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g08087 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01232 EMB2453, ATPPR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.05 OrthoFinder output from all 47 species
Gb_36199 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.02 OrthoFinder output from all 47 species
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 OrthoFinder output from all 47 species
Msp_g27398 EMB2453, ATPPR5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g07398 EMB2453, ATPPR5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g09304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16720 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016075 No alias not classified & original description: CDS=33-1412 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017959 EMB2453, ATPPR5 not classified & original description: CDS=1-1101 0.03 OrthoFinder output from all 47 species
Smo135826 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.03 OrthoFinder output from all 47 species
Solyc01g006500.4.1 Solyc01g006500 Pentatricopeptide repeat-containing protein At5g48730,... 0.04 OrthoFinder output from all 47 species
Solyc04g054270.4.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.02 OrthoFinder output from all 47 species
Tin_g36742 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e031052_P001 Zm00001e031052 Pentatricopeptide repeat-containing protein At5g48730,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 154 207
IPR002885 Pentatricopeptide_repeat 229 276
IPR002885 Pentatricopeptide_repeat 373 401
IPR002885 Pentatricopeptide_repeat 123 152
IPR002885 Pentatricopeptide_repeat 303 332
No external refs found!