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  5. LOC_Os02g51180.1

LOC_Os02g51180.1 (ATCUL3A, ATCUL3,...)


Aliases : ATCUL3A, ATCUL3, CUL3A, CUL3, LOC_Os02g51180

Description : scaffold component CUL3 of CUL3-BTB E3 ligase complexes


Gene families : OG0000920 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000920_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g51180.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AT5G46210 ATCUL4, CUL4 cullin4 0.02 OrthoFinder output from all 47 species
Adi_g009657 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.02 OrthoFinder output from all 47 species
Als_g14090 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.03 OrthoFinder output from all 47 species
Aop_g10257 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.03 OrthoFinder output from all 47 species
Cba_g20473 ATCUL4, CUL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G009200.1 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.03 OrthoFinder output from all 47 species
Ceric.08G045100.1 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000157.110 ATCUL4, CUL4 Cullin-4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020934.33 CUL3B, ATCUL3B Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Dcu_g12615 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.02 OrthoFinder output from all 47 species
GSVIVT01011387001 CUL3B, ATCUL3B Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01020008001 ATCUL3A, ATCUL3,... Cullin-3A OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Lfl_g02244 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.02 OrthoFinder output from all 47 species
MA_10432667g0010 CUL3B, ATCUL3B Cullin-3B OS=Arabidopsis thaliana (sp|q9c9l0|cul3b_arath : 253.0) 0.02 OrthoFinder output from all 47 species
MA_36374g0010 ATCUL4, CUL4 Cullin-4 OS=Arabidopsis thaliana (sp|q8lgh4|cul4_arath : 352.0) 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013899 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.03 OrthoFinder output from all 47 species
Sam_g09683 No alias scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.03 OrthoFinder output from all 47 species
Smo98006 ATCUL3A, ATCUL3,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Solyc01g010820.3.1 ATCUL3A, ATCUL3,... scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.06 OrthoFinder output from all 47 species
Solyc02g021470.4.1 ATCUL4, CUL4,... scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Zm00001e021679_P001 ATCUL3A, ATCUL3,... scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
MF GO:0031625 ubiquitin protein ligase binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR001373 Cullin_N 32 634
IPR019559 Cullin_neddylation_domain 666 727
No external refs found!