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  5. LOC_Os02g48810.1

LOC_Os02g48810.1 (LOC_Os02g48810)


Aliases : LOC_Os02g48810

Description : PHD finger protein At3g20280 OS=Arabidopsis thaliana (sp|q5pns0|y3228_arath : 101.0)


Gene families : OG0004724 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004724_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g48810.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Als_g22107 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Aop_g08057 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Aspi01Gene72157.t1 Aspi01Gene72157 SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Dcu_g48293 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Ore_g36191 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Smo405576 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc12g014540.2.1 Solyc12g014540 PHD finger protein At3g20280 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e023427_P001 Zm00001e023427 PHD finger protein At3g20280 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 209 257
No external refs found!