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  5. LOC_Os02g47870.1

LOC_Os02g47870.1 (LOC_Os02g47870)


Aliases : LOC_Os02g47870

Description : RUB ligase E3 protein (RBX1). UBQ-E2-recruiting component RBX1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes


Gene families : OG0002121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g47870.1
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00244120 HRT1, ATRBX1,... Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.03 OrthoFinder output from all 47 species
Azfi_s0102.g044477 No alias core component *(RBX1) of CULLIN-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Azfi_s3392.g115533 APC11 component *(APC11) of (APC/C)-dependent ubiquitination... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000802.11 No alias Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.01 OrthoFinder output from all 47 species
Cre12.g543450 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.02 OrthoFinder output from all 47 species
Cre13.g590900 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dcu_g49763 No alias core component *(RBX1) of CULLIN-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Msp_g38198 No alias core component *(RBX1) of CULLIN-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Solyc12g009120.2.1 HRT1, ATRBX1,... RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.03 OrthoFinder output from all 47 species
Zm00001e017143_P001 Zm00001e017143 RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.05 OrthoFinder output from all 47 species
Zm00001e023339_P001 Zm00001e023339 RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR024766 Znf_RING_H2 46 104
No external refs found!