LOC_Os02g47150.1 (TOPII, ATTOPII, LOC_Os02g47150)

Aliases : TOPII, ATTOPII, LOC_Os02g47150

Description : DNA topoisomerase (TOP2)

Gene families : OG0002559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002559_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g47150.1
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00103p00101630	TOPII, ATTOPII,...	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.08	OrthoFinder output from all 47 species
AT3G23890	TOPII, ATTOPII	topoisomerase II	0.11	OrthoFinder output from all 47 species
Ala_g25823	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: none	0.05	OrthoFinder output from all 47 species
Als_g04680	TOPII, ATTOPII	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g14096	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: none	0.06	OrthoFinder output from all 47 species
Als_g44163	TOPII, ATTOPII	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Aop_g14194	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: none	0.09	OrthoFinder output from all 47 species
Aspi01Gene00301.t1	TOPII, ATTOPII,...	DNA topoisomerase *(TOP2) & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene03757.t1	TOPII, ATTOPII,...	DNA topoisomerase *(TOP2) & original description: none	0.06	OrthoFinder output from all 47 species
Azfi_s0248.g060132	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: CDS=3554-4336	0.04	OrthoFinder output from all 47 species
Ceric.22G001800.1	TOPII, ATTOPII,...	DNA topoisomerase *(TOP2) & original description:...	0.14	OrthoFinder output from all 47 species
Ceric.22G002000.1	TOPII, ATTOPII,...	DNA topoisomerase *(TOP2) & original description:...	0.11	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021432.55	TOPII, ATTOPII	DNA topoisomerase 2 OS=Pisum sativum	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021433.1	TOPII, ATTOPII	DNA topoisomerase 2 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021433.2	TOPII, ATTOPII	DNA topoisomerase 2 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Cre01.g009250	TOPII, ATTOPII	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.05	OrthoFinder output from all 47 species
Dac_g12747	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g04147	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: none	0.08	OrthoFinder output from all 47 species
GSVIVT01032138001	TOPII, ATTOPII	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.16	OrthoFinder output from all 47 species
Gb_11673	TOPII, ATTOPII	DNA topoisomerase (TOP2)	0.07	OrthoFinder output from all 47 species
Gb_12824	TOPII, ATTOPII	DNA topoisomerase 2 OS=Pisum sativum (sp\|o24308\|top2_pea : 112.0)	0.07	OrthoFinder output from all 47 species
Len_g11702	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: none	0.08	OrthoFinder output from all 47 species
Len_g32193	TOPII, ATTOPII	not classified & original description: none	0.1	OrthoFinder output from all 47 species
MA_133272g0010	TOPII, ATTOPII	DNA topoisomerase (TOP2)	0.07	OrthoFinder output from all 47 species
MA_6634g0010	TOPII, ATTOPII	DNA topoisomerase (TOP2)	0.08	OrthoFinder output from all 47 species
Mp3g13420.1	TOPII, ATTOPII	DNA topoisomerase (TOP2)	0.06	OrthoFinder output from all 47 species
Msp_g37198	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: none	0.09	OrthoFinder output from all 47 species
Nbi_g07573	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: none	0.1	OrthoFinder output from all 47 species
Ore_g33256	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g03282	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0206.g025783	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: CDS=115-4635	0.06	OrthoFinder output from all 47 species
Sam_g08991	No alias	DNA topoisomerase *(TOP2) & original description: none	0.06	OrthoFinder output from all 47 species
Smo127267	TOPII, ATTOPII	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.03	OrthoFinder output from all 47 species
Smo98330	TOPII, ATTOPII	Cell cycle.interphase.DNA replication.preinitiation.TOP2...	0.03	OrthoFinder output from all 47 species
Solyc01g087500.3.1	TOPII, ATTOPII,...	DNA topoisomerase (TOP2)	0.06	OrthoFinder output from all 47 species
Spa_g02147	TOPII, ATTOPII	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Spa_g48476	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g50976	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: none	0.08	OrthoFinder output from all 47 species
Spa_g55866	TOPII, ATTOPII	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Tin_g11875	TOPII, ATTOPII	DNA topoisomerase *(TOP2) & original description: none	0.13	OrthoFinder output from all 47 species
Zm00001e015542_P001	TOPII, ATTOPII,...	DNA topoisomerase (TOP2)	0.15	OrthoFinder output from all 47 species
Zm00001e023296_P001	TOPII, ATTOPII,...	DNA topoisomerase (TOP2)	0.17	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR031660	TOPRIM_C	570	699
IPR003594	HATPase_C	75	222
IPR002205	Topo_IIA_dom_A	702	1182
IPR013506	Topo_IIA_bsu_dom2	267	404
IPR006171	TOPRIM_domain	456	554

External Links

No external refs found!

LOC_Os02g47150.1 (TOPII, ATTOPII, LOC_Os02g47150)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation