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  5. LOC_Os02g46962.1

LOC_Os02g46962.1 (LOC_Os02g46962)


Aliases : LOC_Os02g46962

Description : TOM endomembrane trafficking associated protein


Gene families : OG0000393 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000393_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g46962.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00078110 evm_27.TU.AmTr_v1... Vesicle trafficking.endomembrane trafficking.protein... 0.02 OrthoFinder output from all 47 species
AT2G38410 No alias ENTH/VHS/GAT family protein 0.03 OrthoFinder output from all 47 species
AT5G16880 No alias Target of Myb protein 1 0.04 OrthoFinder output from all 47 species
Adi_g021970 No alias ubiquitin adaptor protein *(TOL) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060028 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0162.g054173 No alias ubiquitin adaptor protein *(TOL) & original description:... 0.02 OrthoFinder output from all 47 species
Azfi_s0544.g076401 No alias ubiquitin adaptor protein *(TOL) & original description:... 0.02 OrthoFinder output from all 47 species
Cba_g58158 No alias ubiquitin adaptor protein *(TOL) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_11104 No alias TOM endomembrane trafficking associated protein 0.04 OrthoFinder output from all 47 species
Gb_13955 No alias TOM endomembrane trafficking associated protein 0.04 OrthoFinder output from all 47 species
Len_g05274 No alias ubiquitin adaptor protein *(TOL) & original description: none 0.02 OrthoFinder output from all 47 species
MA_18331g0030 No alias TOM endomembrane trafficking associated protein 0.02 OrthoFinder output from all 47 species
MA_62715g0010 No alias TOM endomembrane trafficking associated protein 0.03 OrthoFinder output from all 47 species
Mp5g05840.1 No alias TOM endomembrane trafficking associated protein 0.02 OrthoFinder output from all 47 species
Msp_g07938 No alias ubiquitin adaptor protein *(TOL) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g00864 No alias ubiquitin adaptor protein *(TOL) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g10195 No alias ubiquitin adaptor protein *(TOL) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08916 No alias ubiquitin adaptor protein *(TOL) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16580 No alias ubiquitin adaptor protein *(TOL) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10775 No alias ubiquitin adaptor protein *(TOL) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g15243 No alias ubiquitin adaptor protein *(TOL) & original description: none 0.03 OrthoFinder output from all 47 species
Smo67275 No alias Vesicle trafficking.endomembrane trafficking.protein... 0.02 OrthoFinder output from all 47 species
Solyc03g097070.3.1 Solyc03g097070 TOM endomembrane trafficking associated protein 0.03 OrthoFinder output from all 47 species
Solyc04g063280.3.1 Solyc04g063280 TOM endomembrane trafficking associated protein 0.03 OrthoFinder output from all 47 species
Zm00001e011075_P001 Zm00001e011075 TOM endomembrane trafficking associated protein 0.02 OrthoFinder output from all 47 species
Zm00001e015516_P001 Zm00001e015516 TOM endomembrane trafficking associated protein 0.05 OrthoFinder output from all 47 species
Zm00001e023285_P001 Zm00001e023285 TOM endomembrane trafficking associated protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0030014 CCR4-NOT complex IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002014 VHS_dom 46 179
IPR004152 GAT_dom 235 309
No external refs found!