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  5. LOC_Os02g42860.1

LOC_Os02g42860.1 (RH8, ATRH8, LOC_Os02g42860)


Aliases : RH8, ATRH8, LOC_Os02g42860

Description : DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica (sp|q6h7s2|rh8_orysj : 903.0)


Gene families : OG0001822 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g42860.1

Target Alias Description ECC score Gene Family Method Actions
AT4G00660 RH8, ATRH8 RNAhelicase-like 8 0.03 OrthoFinder output from all 47 species
Adi_g012832 RH8, ATRH8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g012833 RH8, ATRH8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035465 RH8, ATRH8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075137 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05633 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05828 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G098800.1 RH8, ATRH8,... DDX6-type mRNA helicase *(RH12/RH8) & original... 0.03 OrthoFinder output from all 47 species
Ceric.07G064200.1 RH8, ATRH8,... DDX6-type mRNA helicase *(RH12/RH8) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001086.7 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Dcu_g08850 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g12091 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g13816 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02022 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g00579 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.02 OrthoFinder output from all 47 species
Pp3s121_40V3.1 RH8, ATRH8, Pp3s121_40 RNAhelicase-like 8 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008978 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original... 0.02 OrthoFinder output from all 47 species
Sam_g24921 No alias DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015237_P002 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 159 323
IPR001650 Helicase_C 360 466
No external refs found!