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  5. LOC_Os02g42040.1

LOC_Os02g42040.1 (LOC_Os02g42040)


Aliases : LOC_Os02g42040

Description : component UPF2 of RNA quality control Exon Junction complex


Gene families : OG0003692 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003692_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g42040.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT2G39260 No alias binding;RNA binding 0.05 OrthoFinder output from all 47 species
Ala_g20588 No alias component *(UPF2) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Als_g03890 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aop_g06089 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Azfi_s0287.g063161 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cba_g33671 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ceric.01G002200.1 Ceric.01G002200 component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022080.18 No alias Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre17.g729250 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 OrthoFinder output from all 47 species
Dac_g09761 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Dcu_g03185 No alias component *(UPF2) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
GSVIVT01016353001 No alias RNA processing.RNA quality control Exon Junction complex... 0.09 OrthoFinder output from all 47 species
Len_g19045 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Lfl_g03486 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
MA_10437229g0010 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Nbi_g09684 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Pnu_g10098 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Sam_g36558 No alias component *(UPF2) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Smo440923 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Solyc04g049770.4.1 Solyc04g049770 component UPF2 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Spa_g12526 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Zm00001e015177_P002 Zm00001e015177 component UPF2 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Zm00001e023044_P004 Zm00001e023044 component UPF2 of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR007193 Upf2/Nmd2_C 906 1041
IPR003890 MIF4G-like_typ-3 386 572
IPR003890 MIF4G-like_typ-3 590 784
No external refs found!