LOC_Os02g39300.1 (LOC_Os02g39300)

Aliases : LOC_Os02g39300

Description : pre-mRNA-processing protein (LUC7)

Gene families : OG0004423 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004423_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g39300.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g020534	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g05756	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g12075	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g14861	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.07G008600.1	UNE6, Ceric.07G008600	pre-mRNA-processing protein *(LUC7) & original...	0.09	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021357.16	No alias	No description available	0.02	OrthoFinder output from all 47 species
Ehy_g17758	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g09785	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.05	OrthoFinder output from all 47 species
MA_79834g0010	UNE6	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp7g03530.1	UNE6	pre-mRNA-processing protein (LUC7)	0.06	OrthoFinder output from all 47 species
Pir_g11730	UNE6	pre-mRNA-processing protein *(LUC7) & original description: none	0.02	OrthoFinder output from all 47 species
Smo151152	UNE6	No description available	0.02	OrthoFinder output from all 47 species
Zm00001e011667_P003	Zm00001e011667	pre-mRNA-processing protein (LUC7)	0.1	OrthoFinder output from all 47 species
Zm00001e015057_P004	Zm00001e015057	pre-mRNA-processing protein (LUC7)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005685	U1 snRNP	IEA	Interproscan
BP	GO:0006376	mRNA splice site selection	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
CC	GO:0030532	small nuclear ribonucleoprotein complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0097525	spliceosomal snRNP complex	None	Extended
CC	GO:0120114	Sm-like protein family complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004882	Luc7-rel	181	327
IPR004882	Luc7-rel	2	174

External Links

No external refs found!

LOC_Os02g39300.1 (LOC_Os02g39300)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation