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  5. LOC_Os02g38680.1

LOC_Os02g38680.1 (EMB2423, LOC_Os02g38680)


Aliases : EMB2423, LOC_Os02g38680

Description : no hits & (original description: none)


Gene families : OG0005846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g38680.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00091690 EMB2423,... No description available 0.04 OrthoFinder output from all 47 species
Aev_g06773 EMB2423 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g15271 EMB2423 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0113.g045969 EMB2423 not classified & original description: CDS=143-3178 0.04 OrthoFinder output from all 47 species
Ceric.03G061400.1 EMB2423, Ceric.03G061400 not classified & original description: pacid=50573034... 0.03 OrthoFinder output from all 47 species
Cre03.g186550 EMB2423 No description available 0.02 OrthoFinder output from all 47 species
Dde_g30814 EMB2423 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007540001 EMB2423 No description available 0.02 OrthoFinder output from all 47 species
Mp2g02540.1 EMB2423 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Sam_g16377 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g006780.4.1 EMB2423, Solyc10g006780 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Spa_g15413 EMB2423 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11835 EMB2423 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019337 Telomere_length_regulation_dom 318 428
No external refs found!