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  5. LOC_Os02g27060.1

LOC_Os02g27060.1 (LOC_Os02g27060)


Aliases : LOC_Os02g27060

Description : High mobility group B protein 15 OS=Arabidopsis thaliana (sp|q9mat6|hmg15_arath : 260.0)


Gene families : OG0000754 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000754_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g27060.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g066995 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02595 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Als_g11304 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Aob_g35893 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene11735.t1 Aspi01Gene11735 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Ceric.05G094900.1 Ceric.05G094900 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g16320 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g02237 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Msp_g08844 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Msp_g13594 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g40091 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Pir_g59649 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Sam_g37018 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Solyc09g091960.3.1 Solyc09g091960 High mobility group B protein 15 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g01322 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Spa_g09265 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Tin_g02883 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Tin_g20974 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e014529_P001 Zm00001e014529 High mobility group B protein 15 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 286 353
IPR001606 ARID_dom 81 162
No external refs found!