- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : LHCA3, LOC_Os02g10390
Description : component LHCa3 of LHC-I complex
Gene families : OG0003350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003350_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00061p00059490 | LHCA3,... | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.15 | OrthoFinder output from all 47 species | |
| AT1G61520 | LHCA3 | photosystem I light harvesting complex gene 3 | 0.16 | OrthoFinder output from all 47 species | |
| Adi_g042980 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.13 | OrthoFinder output from all 47 species | |
| Adi_g075747 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.18 | OrthoFinder output from all 47 species | |
| Aev_g02928 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Aev_g03708 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ala_g05970 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.14 | OrthoFinder output from all 47 species | |
| Ala_g34376 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.13 | OrthoFinder output from all 47 species | |
| Als_g02278 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g11489 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.15 | OrthoFinder output from all 47 species | |
| Aob_g03906 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Aob_g03958 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Aob_g09708 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g18182 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g06037 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Aspi01Gene41799.t1 | LHCA3, Aspi01Gene41799 | component *(LHCa3) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Azfi_s0005.g009434 | LHCA3 | component *(LHCa3) of LHC-I complex & original... | 0.07 | OrthoFinder output from all 47 species | |
| Cba_g13564 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.18G011800.1 | LHCA3, Ceric.18G011800 | component *(LHCa3) of LHC-I complex & original... | 0.15 | OrthoFinder output from all 47 species | |
| Ceric.18G011900.1 | LHCA3, Ceric.18G011900 | component *(LHCa3) of LHC-I complex & original... | 0.12 | OrthoFinder output from all 47 species | |
| Cre11.g467573 | LHCA3 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.13 | OrthoFinder output from all 47 species | |
| Dac_g34473 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Dcu_g10600 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g33769 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.14 | OrthoFinder output from all 47 species | |
| Dde_g13335 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Ehy_g15593 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g23566 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| GSVIVT01019377001 | LHCA3 | Photosystem I chlorophyll a/b-binding protein 3-1,... | 0.17 | OrthoFinder output from all 47 species | |
| Gb_10163 | LHCA3 | component LHCa3 of LHC-I complex | 0.1 | OrthoFinder output from all 47 species | |
| Len_g17078 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| MA_815900g0010 | LHCA3 | component LHCa3 of LHC-I complex | 0.11 | OrthoFinder output from all 47 species | |
| Mp4g00930.1 | LHCA3 | component LHCa3 of LHC-I complex | 0.18 | OrthoFinder output from all 47 species | |
| Msp_g02710 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Nbi_g27710 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| Ore_g03894 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g30216 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Ore_g33396 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Pir_g15180 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Pnu_g28252 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Pp3c16_16040V3.1 | LHCA3, Pp3c16_16040 | photosystem I light harvesting complex gene 3 | 0.09 | OrthoFinder output from all 47 species | |
| Pp3c27_7010V3.1 | LHCA3, Pp3c27_7010 | photosystem I light harvesting complex gene 3 | 0.07 | OrthoFinder output from all 47 species | |
| Pp3c6_22090V3.1 | LHCA3, Pp3c6_22090 | photosystem I light harvesting complex gene 3 | 0.08 | OrthoFinder output from all 47 species | |
| Ppi_g19878 | LHCA3 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g44081 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ppi_g44082 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0073.g017111 | LHCA3 | component *(LHCa3) of LHC-I complex & original... | 0.11 | OrthoFinder output from all 47 species | |
| Sam_g01310 | No alias | component *(LHCa3) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g06804 | No alias | component *(LHCa3) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Sam_g47244 | No alias | component *(LHCa3) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Smo160411 | LHCA3 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc10g007690.3.1 | LHCA3, Solyc10g007690 | component LHCa3 of LHC-I complex | 0.2 | OrthoFinder output from all 47 species | |
| Solyc12g011280.2.1 | LHCA3, Solyc12g011280 | component LHCa3 of LHC-I complex | 0.13 | OrthoFinder output from all 47 species | |
| Spa_g07265 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Tin_g01697 | LHCA3 | component *(LHCa3) of LHC-I complex & original description: none | 0.12 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
| MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| BP | GO:0006790 | sulfur compound metabolic process | IEP | HCCA |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009522 | photosystem I | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009538 | photosystem I reaction center | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| BP | GO:0010109 | regulation of photosynthesis | IEP | HCCA |
| BP | GO:0010207 | photosystem II assembly | IEP | HCCA |
| MF | GO:0010242 | oxygen evolving activity | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | HCCA |
| BP | GO:0016485 | protein processing | IEP | HCCA |
| MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | IEP | HCCA |
| CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0042548 | regulation of photosynthesis, light reaction | IEP | HCCA |
| BP | GO:0042549 | photosystem II stabilization | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| BP | GO:0043467 | regulation of generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| BP | GO:0051604 | protein maturation | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0071586 | CAAX-box protein processing | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| MF | GO:0071949 | FAD binding | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| CC | GO:1902494 | catalytic complex | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 59 | 239 |
| No external refs found! |