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  5. LOC_Os02g09820.1

LOC_Os02g09820.1 (LOC_Os02g09820)


Aliases : LOC_Os02g09820

Description : E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana (sp|q9spl2|cip8_arath : 82.4)


Gene families : OG0000935 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g09820.1

Target Alias Description ECC score Gene Family Method Actions
AT3G63530 BB2, BB RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Aop_g07059 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Gb_32928 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g38790 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ppi_g19039 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0008915 lipid-A-disaccharide synthase activity IEP HCCA
BP GO:0009245 lipid A biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046493 lipid A metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901269 lipooligosaccharide metabolic process IEP HCCA
BP GO:1901271 lipooligosaccharide biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 275 316
No external refs found!